Variant report

Variant	rs585967
Chromosome Location	chr2:21270554-21270555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr2:21269907-21270619	HepG2	liver:	n/a	n/a
2	TEAD4	chr2:21269829-21270733	HepG2	liver:	n/a	n/a
3	SMC3	chr2:21269949-21270612	HepG2	liver:	n/a	n/a
4	EP300	chr2:21269860-21270635	HepG2	liver:	n/a	n/a
5	RFX5	chr2:21269916-21270684	HepG2	liver:	n/a	chr2:21270123-21270138
6	MXI1	chr2:21269344-21271468	SK-N-SH	brain:	n/a	chr2:21270708-21270723 chr2:21269624-21269633
7	RAD21	chr2:21270191-21270751	HepG2	liver:	n/a	n/a
8	FOXA2	chr2:21269662-21270666	HepG2	liver:	n/a	n/a
9	CEBPB	chr2:21270032-21270693	HepG2	liver:	n/a	n/a
10	GATA2	chr2:21270102-21270555	HUVEC	blood vessel:	n/a	chr2:21270369-21270378 chr2:21270371-21270378
11	MAX	chr2:21269854-21270616	HepG2	liver:	n/a	n/a
12	CREB1	chr2:21269925-21270714	HepG2	liver:	n/a	n/a
13	BHLHE40	chr2:21269857-21270787	HepG2	liver:	n/a	n/a
14	HDAC2	chr2:21269987-21270562	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
APOB	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12714264	0.94[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1713222	0.94[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800481	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34722314	1.00[ASN][1000 genomes]
rs531819	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21267400-21271200	Enhancers	Fetal Intestine Small	intestine
2	chr2:21267600-21271200	Enhancers	Fetal Intestine Large	intestine
3	chr2:21269200-21270800	Enhancers	Fetal Brain Male	brain
4	chr2:21269400-21270600	Bivalent Enhancer	Fetal Lung	lung
5	chr2:21269400-21271000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:21269400-21271000	Enhancers	Fetal Brain Female	brain
7	chr2:21269600-21271000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr2:21269600-21271000	Enhancers	Duodenum Mucosa	Duodenum
9	chr2:21269600-21271200	Enhancers	Brain Germinal Matrix	brain
10	chr2:21269800-21270600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:21269800-21271000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:21269800-21271200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:21269800-21271200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr2:21270000-21270600	Enhancers	Gastric	stomach
15	chr2:21270000-21270600	Flanking Active TSS	HepG2	liver
16	chr2:21270000-21271000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:21270000-21271000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr2:21270000-21271000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:21270000-21271800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:21270200-21270600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:21270200-21270600	Enhancers	Fetal Kidney	kidney
22	chr2:21270200-21270600	Enhancers	Ovary	ovary
23	chr2:21270200-21270600	Enhancers	Spleen	Spleen
24	chr2:21270200-21271000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr2:21270400-21270600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr2:21270400-21270600	Flanking Active TSS	Liver	Liver
27	chr2:21270400-21270600	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links