Variant report

Variant	rs58600034
Chromosome Location	chr4:142000919-142000920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:141996781..141998906-chr4:142000172..142002292,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72933018	1.00[AFR][1000 genomes]
rs72933023	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141993400-142003000	Weak transcription	Fetal Kidney	kidney
2	chr4:141994400-142003800	Enhancers	Fetal Heart	heart
3	chr4:141994600-142001800	Weak transcription	Fetal Stomach	stomach
4	chr4:141996000-142006400	Weak transcription	Aorta	Aorta
5	chr4:141997600-142001000	Enhancers	Psoas Muscle	Psoas
6	chr4:141998200-142002800	Enhancers	Colon Smooth Muscle	Colon
7	chr4:141998800-142001200	Enhancers	Adipose Nuclei	Adipose
8	chr4:141998800-142001200	Enhancers	Ovary	ovary
9	chr4:141998800-142001200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:141999200-142014000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:141999400-142001800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:141999600-142002200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:141999600-142002800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:141999600-142003000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:141999600-142003000	Weak transcription	Brain Anterior Caudate	brain
16	chr4:142000000-142001000	Enhancers	Fetal Lung	lung
17	chr4:142000200-142001000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:142000200-142001200	Enhancers	Stomach Smooth Muscle	stomach
19	chr4:142000400-142001200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr4:142000400-142002200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr4:142000400-142002400	Weak transcription	Osteobl	bone
22	chr4:142000400-142003000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr4:142000400-142003000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:142000400-142003200	Weak transcription	Brain Germinal Matrix	brain
25	chr4:142000600-142001200	Enhancers	Left Ventricle	heart
26	chr4:142000600-142001800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:142000600-142003000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:142000600-142003000	Enhancers	Fetal Muscle Leg	muscle
29	chr4:142000800-142001000	Enhancers	Brain Hippocampus Middle	brain
30	chr4:142000800-142003000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:142000800-142003200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:142000800-142031600	Weak transcription	Right Ventricle	heart

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