Variant report

Variant	rs58601621
Chromosome Location	chr22:30598280-30598281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30590030..30593992-chr22:30596510..30599068,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv432239	chr22:30580161-30669883	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv3441265	chr22:30597552-30601950	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30592000-30601400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr22:30592800-30602800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:30592800-30604800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr22:30593200-30598600	Weak transcription	Lung	lung
5	chr22:30593200-30600600	Weak transcription	Spleen	Spleen
6	chr22:30593400-30598600	Weak transcription	Placenta	Placenta
7	chr22:30593600-30598400	Weak transcription	Fetal Intestine Large	intestine
8	chr22:30593600-30598600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr22:30593600-30600800	Weak transcription	Small Intestine	intestine
10	chr22:30593600-30603000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr22:30593800-30600400	Weak transcription	Osteobl	bone
12	chr22:30594400-30598600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr22:30595000-30600400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr22:30595600-30600800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr22:30597000-30598400	Enhancers	Hela-S3	cervix
16	chr22:30597400-30598600	Weak transcription	A549	lung
17	chr22:30597600-30603000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr22:30597600-30609800	Enhancers	Stomach Mucosa	stomach
19	chr22:30597600-30610000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr22:30597800-30598600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr22:30597800-30598600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr22:30597800-30599000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr22:30597800-30599000	Enhancers	Fetal Kidney	kidney
24	chr22:30597800-30599000	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr22:30597800-30599000	ZNF genes & repeats	NHEK	skin
26	chr22:30597800-30599200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr22:30597800-30599200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr22:30597800-30599200	Enhancers	Fetal Stomach	stomach
29	chr22:30597800-30599600	Enhancers	Fetal Lung	lung
30	chr22:30597800-30601200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr22:30597800-30601200	Enhancers	HSMM	muscle
32	chr22:30597800-30601200	Enhancers	NHDF-Ad	bronchial
33	chr22:30597800-30602400	Enhancers	Duodenum Mucosa	Duodenum
34	chr22:30598000-30598400	Enhancers	Gastric	stomach
35	chr22:30598000-30599000	Enhancers	Ovary	ovary
36	chr22:30598000-30599200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr22:30598000-30599200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr22:30598000-30599600	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr22:30598200-30598400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr22:30598200-30598400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr22:30598200-30598600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr22:30598200-30599000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr22:30598200-30599000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr22:30598200-30599200	Enhancers	Fetal Intestine Small	intestine
45	chr22:30598200-30599200	Enhancers	Fetal Thymus	thymus
46	chr22:30598200-30599400	Enhancers	HSMMtube	muscle
47	chr22:30598200-30600000	Enhancers	Pancreas	Pancrea
48	chr22:30598200-30600400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr22:30598200-30601800	Enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links