Variant report

Variant	rs58610235
Chromosome Location	chr3:69400884-69400885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11714469	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11720197	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13066443	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17350262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1905474	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34458014	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34609588	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34841224	1.00[ASN][1000 genomes]
rs4317105	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4855390	1.00[ASN][1000 genomes]
rs66514154	1.00[ASN][1000 genomes]
rs767285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1800315	chr3:69374729-69414587	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69372200-69403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69393400-69402600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:69394000-69403000	Weak transcription	HSMM	muscle
4	chr3:69397800-69406000	Weak transcription	HSMMtube	muscle
5	chr3:69400200-69401000	Transcr. at gene 5' and 3'	HUVEC	blood vessel
6	chr3:69400200-69401000	Enhancers	NHEK	skin
7	chr3:69400200-69401800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:69400200-69402400	Enhancers	Brain Angular Gyrus	brain
9	chr3:69400200-69403400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:69400200-69405400	Enhancers	Brain Substantia Nigra	brain
11	chr3:69400400-69401200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:69400400-69401400	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr3:69400400-69401800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr3:69400400-69401800	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:69400400-69401800	Enhancers	Fetal Thymus	thymus
16	chr3:69400400-69402200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:69400400-69403400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:69400400-69403400	Active TSS	Right Atrium	heart
19	chr3:69400400-69403400	Flanking Active TSS	Dnd41	blood
20	chr3:69400600-69401000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr3:69400600-69401000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr3:69400600-69401200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:69400600-69401400	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr3:69400600-69402200	Enhancers	Primary B cells from cord blood	blood
25	chr3:69400600-69402800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:69400600-69412800	Weak transcription	Esophagus	oesophagus
27	chr3:69400800-69401000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:69400800-69401000	Enhancers	Fetal Lung	lung
29	chr3:69400800-69401000	Enhancers	Fetal Muscle Leg	muscle
30	chr3:69400800-69401200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:69400800-69401200	Enhancers	Brain Hippocampus Middle	brain
32	chr3:69400800-69401400	Enhancers	Aorta	Aorta
33	chr3:69400800-69401600	Weak transcription	Thymus	Thymus
34	chr3:69400800-69402600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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