Variant report

Variant	rs58614585
Chromosome Location	chr5:44697405-44697406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56872915	1.00[EUR][1000 genomes]
rs58446347	1.00[EUR][1000 genomes]
rs58763181	1.00[EUR][1000 genomes]
rs59118917	1.00[EUR][1000 genomes]
rs60940107	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv880457	chr5:44632008-44800665	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830279	chr5:44688175-44860815	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44696600-44697600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr5:44696600-44697800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:44696800-44698000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:44697000-44697600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:44697000-44697600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:44697000-44697600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:44697000-44697600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:44697000-44697800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:44697200-44697600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:44697200-44697600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:44697400-44697600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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