Variant report
| Variant | rs58620322 |
|---|---|
| Chromosome Location | chr12:68289281-68289282 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000127334 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1420348 | 1.00[EUR][1000 genomes] |
| rs17104263 | 1.00[EUR][1000 genomes] |
| rs1812057 | 1.00[EUR][1000 genomes] |
| rs73316764 | 1.00[EUR][1000 genomes] |
| rs74099768 | 1.00[EUR][1000 genomes] |
| rs74099769 | 1.00[EUR][1000 genomes] |
| rs74099770 | 1.00[EUR][1000 genomes] |
| rs74099772 | 1.00[EUR][1000 genomes] |
| rs74099786 | 1.00[EUR][1000 genomes] |
| rs74099789 | 1.00[EUR][1000 genomes] |
| rs74099791 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3411149 | chr12:68066948-68435533 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
