Variant report

Variant	rs58622351
Chromosome Location	chr14:105946405-105946406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105766285..105767822-chr14:105945911..105948679,2	MCF-7	breast:
2	chr14:105877337..105879104-chr14:105945507..105947166,2	MCF-7	breast:
3	chr14:105901633..105904237-chr14:105946344..105949150,3	MCF-7	breast:
4	chr14:105713738..105716162-chr14:105946166..105948343,2	MCF-7	breast:
5	chr14:105945980..105950779-chr14:105991667..105994836,5	K562	blood:
6	chr14:105944424..105949494-chr14:105991782..105997266,9	MCF-7	breast:
7	chr14:105945919..105949902-chr14:105993265..105997331,11	MCF-7	breast:
8	chr14:105862874..105866826-chr14:105946373..105950090,5	K562	blood:
9	chr14:105839425..105843389-chr14:105946239..105949044,4	MCF-7	breast:
10	chr14:105946210..105948124-chr17:59469591..59472148,2	MCF-7	breast:
11	chr14:105932715..105935765-chr14:105945962..105949980,4	K562	blood:
12	chr14:105925538..105928214-chr14:105944900..105948509,4	K562	blood:
13	chr14:105902283..105908432-chr14:105944817..105951373,9	MCF-7	breast:
14	chr14:105905481..105908435-chr14:105945567..105949931,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267280	Chromatin interaction
ENSG00000184986	Chromatin interaction
ENSG00000184887	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000182979	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000226174	Chromatin interaction
ENSG00000242085	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10150915	1.00[AMR][1000 genomes]
rs12590846	1.00[AMR][1000 genomes]
rs4983409	1.00[AMR][1000 genomes]
rs4983415	1.00[AMR][1000 genomes]
rs8008091	1.00[AMR][1000 genomes]
rs8008685	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105942000-105947000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr14:105942000-105947000	Weak transcription	K562	blood
3	chr14:105943200-105947400	Weak transcription	Ovary	ovary
4	chr14:105943200-105949400	Enhancers	Fetal Brain Male	brain
5	chr14:105943400-105947200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:105943400-105947200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:105943800-105946800	Weak transcription	NHDF-Ad	bronchial
8	chr14:105943800-105947000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:105943800-105947000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:105943800-105947400	Weak transcription	Osteobl	bone
11	chr14:105944000-105946800	Weak transcription	Brain Substantia Nigra	brain
12	chr14:105944000-105946800	Weak transcription	Stomach Mucosa	stomach
13	chr14:105944000-105946800	Weak transcription	HMEC	breast
14	chr14:105944000-105946800	Weak transcription	HSMMtube	muscle
15	chr14:105944000-105946800	Weak transcription	NH-A	brain
16	chr14:105944000-105947000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:105944000-105947000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:105944000-105947000	Weak transcription	Liver	Liver
19	chr14:105944000-105947000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:105944000-105947000	Weak transcription	Fetal Kidney	kidney
21	chr14:105944000-105947000	Weak transcription	HepG2	liver
22	chr14:105944000-105947200	Weak transcription	Brain Angular Gyrus	brain
23	chr14:105944000-105947400	Enhancers	Primary B cells from peripheral blood	blood
24	chr14:105944000-105947400	Weak transcription	Aorta	Aorta
25	chr14:105944000-105947400	Enhancers	Fetal Heart	heart
26	chr14:105944000-105947400	Bivalent Enhancer	Fetal Intestine Large	intestine
27	chr14:105944000-105947400	Weak transcription	Gastric	stomach
28	chr14:105944000-105947400	Weak transcription	Psoas Muscle	Psoas
29	chr14:105944200-105946800	Weak transcription	Primary T cells from cord blood	blood
30	chr14:105944200-105946800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:105944200-105947000	Weak transcription	HUVEC	blood vessel
32	chr14:105944200-105947400	Weak transcription	Right Atrium	heart
33	chr14:105944400-105946800	Enhancers	A549	lung
34	chr14:105944600-105946600	Genic enhancers	Left Ventricle	heart
35	chr14:105944800-105947000	Weak transcription	Fetal Lung	lung
36	chr14:105945000-105947000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr14:105945000-105947000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:105945200-105947400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:105945400-105946600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:105945600-105946600	Strong transcription	NHLF	lung
41	chr14:105945600-105947000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr14:105945600-105947000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:105945600-105947000	Genic enhancers	Fetal Muscle Leg	muscle
44	chr14:105945600-105947400	Enhancers	Primary hematopoietic stem cells	blood
45	chr14:105945600-105947400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:105945600-105947400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr14:105945600-105947600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
48	chr14:105945800-105946600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:105945800-105946600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:105945800-105946600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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