Variant report

Variant	rs58622490
Chromosome Location	chr12:117365810-117365811
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117348721..117350457-chr12:117364988..117367917,3	MCF-7	breast:
2	chr12:117364974..117366703-chr12:117369746..117372327,2	MCF-7	breast:
3	chr12:117359173..117361921-chr12:117365401..117367494,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174989	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1046811	chr12:117353904-117396230	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
3	esv1798657	chr12:117354067-117392259	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
4	nsv1048942	chr12:117365506-117400588	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv2103517	chr12:117365810-117365812	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117349800-117366000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:117349800-117366000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:117349800-117366000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:117349800-117371000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:117350000-117366000	Weak transcription	Fetal Lung	lung
6	chr12:117350200-117366000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr12:117350200-117366000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr12:117350200-117366800	Weak transcription	Spleen	Spleen
9	chr12:117350200-117367800	Weak transcription	Brain Germinal Matrix	brain
10	chr12:117350200-117371000	Weak transcription	Right Ventricle	heart
11	chr12:117350600-117370600	Weak transcription	Fetal Brain Male	brain
12	chr12:117354800-117383200	Weak transcription	Esophagus	oesophagus
13	chr12:117357200-117367600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr12:117357800-117367600	Weak transcription	Fetal Heart	heart
15	chr12:117358000-117366000	Weak transcription	Liver	Liver
16	chr12:117358400-117366000	Weak transcription	Fetal Intestine Large	intestine
17	chr12:117358400-117366000	Weak transcription	Fetal Kidney	kidney
18	chr12:117358400-117392600	Weak transcription	Small Intestine	intestine
19	chr12:117358600-117366000	Weak transcription	Fetal Intestine Small	intestine
20	chr12:117358800-117374000	Weak transcription	Colonic Mucosa	Colon
21	chr12:117359200-117367400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:117359400-117366000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr12:117362800-117366000	Weak transcription	Hela-S3	cervix
24	chr12:117363000-117367400	Weak transcription	HepG2	liver
25	chr12:117363200-117366000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr12:117363200-117366000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr12:117363200-117366000	Weak transcription	Fetal Thymus	thymus
28	chr12:117363200-117366000	Weak transcription	Gastric	stomach
29	chr12:117363200-117366000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr12:117363200-117366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr12:117363200-117366000	Weak transcription	A549	lung
32	chr12:117363200-117366000	Weak transcription	HSMMtube	muscle
33	chr12:117363200-117371200	Weak transcription	Stomach Mucosa	stomach
34	chr12:117363200-117399400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr12:117363400-117366000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr12:117363400-117366000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr12:117363400-117366000	Weak transcription	K562	blood
38	chr12:117363400-117366000	Weak transcription	NH-A	brain
39	chr12:117363400-117366000	Weak transcription	NHLF	lung
40	chr12:117363400-117366400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr12:117363400-117370000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr12:117363400-117373400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr12:117363400-117375200	Weak transcription	HMEC	breast
44	chr12:117363400-117381000	Weak transcription	NHEK	skin
45	chr12:117363400-117381400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr12:117363400-117385000	Weak transcription	HUVEC	blood vessel
47	chr12:117363600-117375000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr12:117363800-117366000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr12:117363800-117371000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr12:117363800-117374000	Weak transcription	Thymus	Thymus

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