Variant report

Variant	rs58628055
Chromosome Location	chr11:120578781-120578782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12285821	1.00[AMR][1000 genomes]
rs13377589	1.00[AMR][1000 genomes]
rs58708223	1.00[AMR][1000 genomes]
rs60377698	1.00[AMR][1000 genomes]
rs60571132	1.00[AMR][1000 genomes]
rs73584550	1.00[AMR][1000 genomes]
rs73584553	1.00[AMR][1000 genomes]
rs73586339	1.00[AMR][1000 genomes]
rs73586364	1.00[AMR][1000 genomes]
rs73586365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120568000-120580600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:120570000-120581600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:120577400-120578800	Strong transcription	Fetal Lung	lung
4	chr11:120577600-120579000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
5	chr11:120577600-120579400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:120577600-120579400	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr11:120577800-120578800	ZNF genes & repeats	Ovary	ovary
8	chr11:120578000-120578800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:120578000-120578800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
10	chr11:120578200-120579000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
11	chr11:120578200-120580600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:120578400-120579200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:120578600-120581600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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