Variant report

Variant	rs58632953
Chromosome Location	chr6:36003708-36003709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36003182..36006144-chr6:36044765..36047625,2	K562	blood:
2	chr6:36002332..36004351-chr6:36041917..36043822,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2237096	0.81[AFR][1000 genomes]
rs3804454	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413204	0.85[AFR][1000 genomes]
rs61763101	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35997400-36004000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:35997600-36004200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:35997600-36005400	Weak transcription	Aorta	Aorta
4	chr6:35997600-36005400	Weak transcription	Left Ventricle	heart
5	chr6:35997600-36008800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:35997600-36010800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:35997600-36021800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:35998000-36003800	Enhancers	Colon Smooth Muscle	Colon
9	chr6:35998000-36004400	Enhancers	Fetal Lung	lung
10	chr6:35998000-36007400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:35998000-36019200	Weak transcription	HSMM	muscle
12	chr6:35998200-36006000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:35998200-36006600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:35998200-36018400	Weak transcription	NHLF	lung
15	chr6:35998200-36018600	Weak transcription	NHDF-Ad	bronchial
16	chr6:35998400-36003800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:35998600-36007400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:35998800-36003800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:35998800-36003800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:35998800-36005600	Weak transcription	Fetal Brain Female	brain
21	chr6:35998800-36008800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:35999000-36027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:35999200-36004000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:36000000-36004400	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:36000200-36003800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:36000200-36003800	Enhancers	Adipose Nuclei	Adipose
27	chr6:36000400-36005400	Weak transcription	HUVEC	blood vessel
28	chr6:36000600-36005200	Weak transcription	Fetal Kidney	kidney
29	chr6:36000600-36005600	Weak transcription	Fetal Intestine Large	intestine
30	chr6:36000600-36005800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:36000600-36006000	Weak transcription	Dnd41	blood
32	chr6:36000600-36009800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:36000600-36020400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:36000600-36027400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:36000800-36009200	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:36001600-36003800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:36001600-36004000	Enhancers	Duodenum Mucosa	Duodenum
38	chr6:36001600-36004400	Enhancers	Brain Germinal Matrix	brain
39	chr6:36001600-36004400	Enhancers	Fetal Heart	heart
40	chr6:36001600-36006000	Weak transcription	Lung	lung
41	chr6:36001800-36003800	Enhancers	NH-A	brain
42	chr6:36001800-36004200	Enhancers	Fetal Stomach	stomach
43	chr6:36001800-36005400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:36001800-36005600	Enhancers	Primary hematopoietic stem cells	blood
45	chr6:36001800-36005800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:36002000-36004200	Weak transcription	K562	blood
47	chr6:36002000-36004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:36002000-36005000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr6:36002000-36005000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:36002000-36005000	Weak transcription	Thymus	Thymus

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