Variant report

Variant	rs58640086
Chromosome Location	chr7:119215888-119215889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119211056..119214261-chr7:119214480..119218185,4	K562	blood:
2	chr7:119212184..119216632-chr7:119220970..119225768,5	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10233853	0.81[EUR][1000 genomes]
rs10247975	0.81[EUR][1000 genomes]
rs10267001	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10274212	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13230241	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1404084	0.81[EUR][1000 genomes]
rs1949782	0.81[EUR][1000 genomes]
rs2049378	0.83[AMR][1000 genomes]
rs2049380	0.81[EUR][1000 genomes]
rs2056583	0.81[EUR][1000 genomes]
rs2204311	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2402489	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4278103	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4338035	0.83[AMR][1000 genomes]
rs4449718	0.89[EUR][1000 genomes]
rs4460311	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4529399	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4727900	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4727902	0.81[EUR][1000 genomes]
rs58135787	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6466712	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6968560	0.81[EUR][1000 genomes]
rs7779237	0.81[EUR][1000 genomes]
rs7782751	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7791400	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7799121	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9641626	0.81[EUR][1000 genomes]
rs9641628	0.81[EUR][1000 genomes]
rs9691446	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019377	chr7:119164442-119233633	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019921	chr7:119166254-119233633	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3345886	chr7:119204050-119225361	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119213000-119218200	Weak transcription	Brain Substantia Nigra	brain

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