Variant report

Variant	rs58640391
Chromosome Location	chr4:78500068-78500069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7679420	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78499400-78500200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:78499400-78501200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr4:78499600-78500400	Enhancers	HSMM	muscle
4	chr4:78499800-78500400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:78499800-78502800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:78500000-78500200	Enhancers	NH-A	brain
7	chr4:78500000-78500400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:78500000-78500400	Enhancers	Osteobl	bone
9	chr4:78500000-78500800	Enhancers	HMEC	breast
10	chr4:78500000-78501200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:78500000-78501200	Enhancers	HSMMtube	muscle
12	chr4:78500000-78501200	Enhancers	NHLF	lung
13	chr4:78500000-78501400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:78500000-78501400	Enhancers	Hela-S3	cervix
15	chr4:78500000-78501800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:78500000-78501800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:78500000-78501800	Enhancers	NHDF-Ad	bronchial
18	chr4:78500000-78502000	Enhancers	NHEK	skin
19	chr4:78500000-78504600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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