Variant report

Variant	rs58646265
Chromosome Location	chr19:41218459-41218460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41216506..41219364-chr19:41220108..41222440,2	K562	blood:

Variant related genes	Relation type
ENSG00000123815	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58720852	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	esv1800615	chr19:41127465-41270055	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1067017	chr19:41185992-41231251	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41197200-41220200	Weak transcription	Fetal Heart	heart
2	chr19:41197200-41220600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr19:41197400-41219800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr19:41197400-41220000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr19:41197400-41220000	Strong transcription	Fetal Intestine Small	intestine
6	chr19:41197400-41220200	Weak transcription	HUVEC	blood vessel
7	chr19:41197600-41220200	Weak transcription	Psoas Muscle	Psoas
8	chr19:41197800-41219000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr19:41198400-41219800	Weak transcription	NH-A	brain
10	chr19:41204200-41219800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:41204400-41219000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr19:41204600-41219400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr19:41205000-41219000	Strong transcription	Fetal Intestine Large	intestine
14	chr19:41205200-41218800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr19:41205200-41218800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr19:41205400-41219000	Strong transcription	Liver	Liver
17	chr19:41205400-41219200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:41205400-41220200	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr19:41205600-41218800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr19:41205600-41219200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr19:41205800-41219400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:41206400-41219800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr19:41208600-41220000	Strong transcription	Fetal Stomach	stomach
24	chr19:41208800-41220000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:41208800-41220200	Weak transcription	Stomach Mucosa	stomach
26	chr19:41208800-41221000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr19:41209000-41219000	Strong transcription	A549	lung
28	chr19:41209200-41219200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr19:41209200-41220200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr19:41210800-41220200	Weak transcription	Fetal Brain Male	brain
31	chr19:41210800-41220200	Weak transcription	K562	blood
32	chr19:41211000-41220000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr19:41211200-41218600	Weak transcription	HSMMtube	muscle
34	chr19:41211400-41220200	Weak transcription	Hela-S3	cervix
35	chr19:41211400-41220400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr19:41211400-41220400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr19:41211600-41219800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr19:41211800-41219800	Weak transcription	HMEC	breast
39	chr19:41211800-41220000	Weak transcription	Gastric	stomach
40	chr19:41211800-41220000	Weak transcription	Pancreas	Pancrea
41	chr19:41211800-41220200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr19:41211800-41220200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr19:41212200-41219800	Weak transcription	Right Ventricle	heart
44	chr19:41212200-41220400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr19:41212200-41220600	Weak transcription	Aorta	Aorta
46	chr19:41212400-41219800	Weak transcription	Brain Angular Gyrus	brain
47	chr19:41212400-41220200	Weak transcription	Esophagus	oesophagus
48	chr19:41212600-41220200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr19:41212600-41220400	Weak transcription	Small Intestine	intestine
50	chr19:41213200-41219800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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