Variant report

Variant	rs58656828
Chromosome Location	chr15:78439829-78439830
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr15:78439680-78439934	K562	blood:	n/a	n/a
2	FOS	chr15:78439368-78439881	MCF10A-Er-Src	breast:	n/a	n/a
3	ATF3	chr15:78439530-78439890	K562	blood:	n/a	n/a
4	FOSL1	chr15:78439594-78439852	K562	blood:	n/a	chr15:78439710-78439721
5	POLR2A	chr15:78439639-78439871	K562	blood:	n/a	n/a
6	STAT3	chr15:78439329-78439908	MCF10A-Er-Src	breast:	n/a	n/a
7	TAL1	chr15:78439561-78439941	K562	blood:	n/a	n/a
8	FOS	chr15:78439370-78439878	MCF10A-Er-Src	breast:	n/a	n/a
9	JUN	chr15:78439439-78440073	K562	blood:	n/a	n/a
10	MAX	chr15:78439504-78439901	K562	blood:	n/a	n/a
11	FOS	chr15:78438751-78439866	MCF10A-Er-Src	breast:	n/a	n/a
12	JUND	chr15:78439540-78439954	K562	blood:	n/a	n/a
13	TEAD4	chr15:78439566-78439961	K562	blood:	n/a	n/a
14	JUN	chr15:78439554-78439867	K562	blood:	n/a	n/a
15	FOSL1	chr15:78439513-78439944	K562	blood:	n/a	chr15:78439710-78439721
16	FOS	chr15:78438776-78439905	MCF10A-Er-Src	breast:	n/a	n/a
17	ATF3	chr15:78439633-78439872	K562	blood:	n/a	n/a
18	POLR2A	chr15:78439724-78440745	K562	blood:	n/a	n/a
19	BHLHE40	chr15:78439634-78439842	K562	blood:	n/a	n/a
20	MAX	chr15:78439509-78439870	K562	blood:	n/a	n/a
21	HDAC2	chr15:78439602-78439909	K562	blood:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78438626..78440576-chr15:78459614..78461953,2	K562	blood:
2	chr15:78414752..78417603-chr15:78438939..78440752,2	MCF-7	breast:
3	chr15:78421103..78425437-chr15:78438436..78443517,9	MCF-7	breast:
4	chr15:78439170..78443635-chr15:78452310..78455814,4	K562	blood:
5	chr15:78437153..78440009-chr15:78444178..78446804,3	MCF-7	breast:
6	chr15:78437349..78439944-chr15:78555293..78556889,2	MCF-7	breast:
7	chr15:78422180..78427678-chr15:78438636..78444300,13	MCF-7	breast:
8	chr15:78422233..78425731-chr15:78438987..78443227,7	K562	blood:
9	chr15:78437651..78440580-chr15:78459542..78461046,2	MCF-7	breast:
10	chr15:78437413..78439918-chr15:78471623..78473708,2	K562	blood:
11	chr15:78422015..78425228-chr15:78439030..78443289,7	K562	blood:

No data

Variant related genes	Relation type
IDH3A	TF binding region
ENSG00000166411	Chromatin interaction
ENSG00000136425	Chromatin interaction
ENSG00000140403	Chromatin interaction
ENSG00000259708	Chromatin interaction
ENSG00000103740	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59369494	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166515	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78424600-78440800	Weak transcription	HSMMtube	muscle
2	chr15:78425000-78440600	Weak transcription	Fetal Stomach	stomach
3	chr15:78426000-78440200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:78432600-78440200	Weak transcription	Small Intestine	intestine
5	chr15:78433000-78440600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:78433600-78440400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:78433800-78440200	Weak transcription	Right Ventricle	heart
8	chr15:78435200-78440400	Weak transcription	HepG2	liver
9	chr15:78436000-78440600	Weak transcription	Thymus	Thymus
10	chr15:78437000-78440000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:78437600-78440600	Weak transcription	HSMM	muscle
12	chr15:78438200-78441000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:78438400-78440400	Weak transcription	Liver	Liver
14	chr15:78438400-78440800	Enhancers	Adipose Nuclei	Adipose
15	chr15:78438400-78440800	Enhancers	Fetal Intestine Large	intestine
16	chr15:78438400-78441000	Enhancers	Psoas Muscle	Psoas
17	chr15:78438600-78440600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:78438600-78440600	Enhancers	Hela-S3	cervix
19	chr15:78438600-78440600	Enhancers	NHEK	skin
20	chr15:78438600-78440800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:78438600-78441000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:78438600-78441000	Enhancers	Placenta	Placenta
23	chr15:78438800-78440400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:78438800-78440600	Enhancers	K562	blood
25	chr15:78438800-78440800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:78438800-78440800	Enhancers	HMEC	breast
27	chr15:78438800-78441000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:78438800-78441200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:78439000-78440000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:78439000-78440000	Weak transcription	Right Atrium	heart
31	chr15:78439000-78440400	Enhancers	A549	lung
32	chr15:78439000-78440600	Weak transcription	NHDF-Ad	bronchial
33	chr15:78439000-78440800	Enhancers	Esophagus	oesophagus
34	chr15:78439000-78440800	Enhancers	Fetal Heart	heart
35	chr15:78439000-78440800	Enhancers	Pancreas	Pancrea
36	chr15:78439200-78440000	Weak transcription	Fetal Intestine Small	intestine
37	chr15:78439200-78440200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:78439200-78440200	Weak transcription	Fetal Thymus	thymus
39	chr15:78439200-78440400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:78439200-78441000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr15:78439400-78440400	Weak transcription	Osteobl	bone
42	chr15:78439400-78440600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:78439800-78440000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr15:78439800-78440200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:78439800-78440400	Enhancers	Left Ventricle	heart
46	chr15:78439800-78440600	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:78439800-78440600	Enhancers	Placenta Amnion	Placenta Amnion
48	chr15:78439800-78440800	Enhancers	Stomach Mucosa	stomach

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