Variant report

Variant	rs58677678
Chromosome Location	chr12:10277605-10277606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10845046	0.85[EUR][1000 genomes]
rs10845047	0.85[EUR][1000 genomes]
rs10845048	0.88[EUR][1000 genomes]
rs10845050	0.96[EUR][1000 genomes]
rs11053592	0.88[EUR][1000 genomes]
rs11053593	0.88[EUR][1000 genomes]
rs11053595	0.88[EUR][1000 genomes]
rs11053597	0.88[EUR][1000 genomes]
rs11053598	0.88[EUR][1000 genomes]
rs11053602	0.88[EUR][1000 genomes]
rs11053603	0.88[EUR][1000 genomes]
rs11053604	0.83[EUR][1000 genomes]
rs11053605	0.81[EUR][1000 genomes]
rs11053613	0.96[EUR][1000 genomes]
rs11053615	0.96[EUR][1000 genomes]
rs11053617	0.96[EUR][1000 genomes]
rs12304716	0.83[EUR][1000 genomes]
rs16910526	0.92[EUR][1000 genomes]
rs55682899	0.83[EUR][1000 genomes]
rs56140555	0.96[EUR][1000 genomes]
rs56155255	0.88[EUR][1000 genomes]
rs56371657	0.88[EUR][1000 genomes]
rs57078967	0.81[EUR][1000 genomes]
rs58924693	0.88[EUR][1000 genomes]
rs59051690	0.88[EUR][1000 genomes]
rs59388877	0.88[EUR][1000 genomes]
rs59913193	0.96[EUR][1000 genomes]
rs7136680	0.96[EUR][1000 genomes]
rs7137840	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10264600-10281000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:10268800-10278800	Weak transcription	Spleen	Spleen
3	chr12:10274200-10280800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:10274400-10280400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:10276600-10280600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
6	chr12:10277000-10280000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
7	chr12:10277400-10279800	Genic enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:10277600-10277800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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