Variant report

Variant	rs58683486
Chromosome Location	chr1:213080479-213080480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57407556	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1007129	chr1:213037244-213083261	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213073800-213089000	Weak transcription	Pancreas	Pancrea
2	chr1:213076800-213083600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:213079000-213082600	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:213079200-213081400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:213079400-213080600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:213079400-213081400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:213079600-213080600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:213079600-213080600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:213079600-213081200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:213079600-213090000	Weak transcription	Right Atrium	heart
11	chr1:213079800-213080600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:213079800-213082400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:213079800-213082400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:213080200-213080800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:213080200-213081200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:213080400-213081800	Genic enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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