Variant report

Variant	rs58684396
Chromosome Location	chr12:9323001-9323002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr12:9322590-9323796	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PZP	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56851950	1.00[AFR][1000 genomes]
rs59566646	0.85[AFR][1000 genomes]
rs73246399	1.00[AFR][1000 genomes]
rs73249108	0.96[AFR][1000 genomes]
rs73249110	0.92[AFR][1000 genomes]
rs73249115	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv527404	chr12:9250601-9435244	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv523958	chr12:9303440-9549072	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv557355	chr12:9309995-9529015	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1035953	chr12:9314481-9544655	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9304200-9323200	Strong transcription	Liver	Liver
2	chr12:9305000-9325000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:9309200-9337000	Weak transcription	Primary T cells from cord blood	blood
4	chr12:9320200-9323400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:9321200-9323200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:9321800-9323200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:9322000-9323200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr12:9322000-9324200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:9322400-9323200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr12:9322400-9323400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr12:9322600-9323400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:9322800-9323200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr12:9322800-9323400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr12:9322800-9323400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:9322800-9323400	Enhancers	HUVEC	blood vessel
16	chr12:9322800-9323600	Enhancers	Spleen	Spleen
17	chr12:9323000-9323200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr12:9323000-9323200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:9323000-9323200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr12:9323000-9323400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr12:9323000-9323400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr12:9323000-9323400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:9323000-9323400	Enhancers	Fetal Muscle Trunk	muscle
24	chr12:9323000-9323400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr12:9323000-9323600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr12:9323000-9323600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr12:9323000-9323600	Enhancers	Right Ventricle	heart
28	chr12:9323000-9323800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:9323000-9323800	Enhancers	Left Ventricle	heart
30	chr12:9323000-9323800	Enhancers	Lung	lung
31	chr12:9323000-9323800	ZNF genes & repeats	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links