Variant report

Variant	rs58688375
Chromosome Location	chr3:120855789-120855790
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:120850081..120852968-chr3:120854898..120857782,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1191293	0.80[ASN][1000 genomes]
rs1191300	0.86[ASN][1000 genomes]
rs1191306	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1191309	0.86[ASN][1000 genomes]
rs11918518	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1699956	0.89[EUR][1000 genomes]
rs1699960	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1795390	0.88[ASN][1000 genomes]
rs1795392	0.84[ASN][1000 genomes]
rs2331521	0.82[ASN][1000 genomes]
rs2331527	0.82[ASN][1000 genomes]
rs338960	0.92[EUR][1000 genomes]
rs338982	0.91[EUR][1000 genomes]
rs338991	0.91[EUR][1000 genomes]
rs338997	0.87[EUR][1000 genomes]
rs339003	0.91[EUR][1000 genomes]
rs35345840	0.82[ASN][1000 genomes]
rs3845849	0.82[ASN][1000 genomes]
rs3914743	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3914744	0.82[ASN][1000 genomes]
rs4306806	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4510329	0.82[ASN][1000 genomes]
rs4630876	0.82[ASN][1000 genomes]
rs55989794	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs58222742	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs591475	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60648200	0.90[ASN][1000 genomes]
rs60935823	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs638724	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6775508	0.90[ASN][1000 genomes]
rs6805670	0.82[ASN][1000 genomes]
rs6807604	0.82[ASN][1000 genomes]
rs7615712	0.86[ASN][1000 genomes]
rs7615991	0.82[ASN][1000 genomes]
rs7616466	0.82[ASN][1000 genomes]
rs7635903	0.82[ASN][1000 genomes]
rs7641749	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7648360	0.86[ASN][1000 genomes]
rs9827836	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9844667	0.82[ASN][1000 genomes]
rs9860056	0.86[ASN][1000 genomes]
rs9863707	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9866746	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1008441	chr3:120730017-121102735	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536709	chr3:120730017-121102735	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1005525	chr3:120749594-121027161	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120855400-120866600	Weak transcription	Ovary	ovary

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