Variant report

Variant	rs58689485
Chromosome Location	chr3:133409235-133409236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55736717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55935735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56047244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59755236	0.87[AFR][1000 genomes]
rs59787433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72972233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7629360	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7639533	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv979783	chr3:133408825-133413260	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133407200-133409600	Weak transcription	Left Ventricle	heart
2	chr3:133407200-133410200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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