Variant report

Variant	rs58691913
Chromosome Location	chr13:30467478-30467479
allele	-/TTAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBL3-5	chr13:30467193-30467612	l_803_chr13:30467192-30468397_testes
2	lnc-UBL3-5	chr13:30467299-30467612	NONHSAT032755

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3403452	chr13:30466852-30468000	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30452200-30468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30452200-30468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:30452600-30472200	Weak transcription	Ovary	ovary
4	chr13:30462000-30468200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:30462400-30468200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:30463000-30467600	Weak transcription	Fetal Lung	lung
7	chr13:30463000-30468000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:30463000-30476400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr13:30463400-30468000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:30463600-30468000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:30466600-30467600	Weak transcription	NHDF-Ad	bronchial
12	chr13:30466600-30468000	Weak transcription	Esophagus	oesophagus
13	chr13:30466600-30468200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:30466800-30467800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:30466800-30468000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr13:30466800-30468000	Weak transcription	Pancreas	Pancrea
17	chr13:30466800-30468200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:30466800-30468400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr13:30467000-30467800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:30467000-30467800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr13:30467000-30468200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr13:30467400-30468400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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