The 2.0 version of rSNPBase

Variant report

Variant rs58693268
Chromosome Location chr3:112083842-112083843
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:112066000-112089800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:112069200-112084000 Weak transcription Fetal Kidney kidney
3 chr3:112069200-112095400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr3:112070200-112086200 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr3:112070600-112086200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr3:112070600-112088800 Weak transcription Brain Cingulate Gyrus brain
7 chr3:112070800-112084600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr3:112070800-112090600 Weak transcription Brain Hippocampus Middle brain
9 chr3:112077200-112094200 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr3:112077600-112107200 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr3:112077800-112085400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr3:112077800-112085400 Weak transcription Ovary ovary
13 chr3:112078000-112085200 Strong transcription HUES48 Cell Line embryonic stem cell
14 chr3:112078200-112086400 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr3:112079400-112085600 Strong transcription iPS-18 Cell Line embryonic stem cell
16 chr3:112079400-112085800 Strong transcription Primary hematopoietic stem cells blood
17 chr3:112079400-112086200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr3:112079600-112085800 Strong transcription Primary hematopoietic stem cells short term culture blood
19 chr3:112080000-112084000 Weak transcription Hela-S3 cervix
20 chr3:112080000-112088800 Weak transcription Colon Smooth Muscle Colon
21 chr3:112080000-112096000 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr3:112080600-112087400 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr3:112080800-112084200 Weak transcription Aorta Aorta
24 chr3:112081000-112084000 Weak transcription Brain Inferior Temporal Lobe brain
25 chr3:112081000-112085600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr3:112081000-112088800 Weak transcription Rectal Smooth Muscle rectum
27 chr3:112081200-112085400 Weak transcription Brain Angular Gyrus brain
28 chr3:112081200-112085800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr3:112081200-112092800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr3:112081400-112084000 Weak transcription Fetal Lung lung
31 chr3:112081400-112085400 Weak transcription Fetal Brain Male brain
32 chr3:112081400-112088000 Weak transcription Fetal Muscle Trunk muscle
33 chr3:112081400-112091600 Weak transcription Primary T cells from cord blood blood
34 chr3:112082200-112096000 Weak transcription Fetal Stomach stomach
35 chr3:112082400-112084000 Weak transcription Fetal Brain Female brain
36 chr3:112082400-112084600 Strong transcription Brain Germinal Matrix brain
37 chr3:112082600-112084600 Strong transcription Fetal Muscle Leg muscle
38 chr3:112082600-112094600 Weak transcription Brain Anterior Caudate brain
39 chr3:112082800-112084800 Enhancers Primary T helper cells fromperipheralblood blood
40 chr3:112083000-112084000 Enhancers Primary monocytes fromperipheralblood blood
41 chr3:112083000-112084000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr3:112083000-112085600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr3:112083000-112085600 Enhancers HMEC breast
44 chr3:112083200-112084800 Genic enhancers Primary T helper cells PMA-I stimulated --
45 chr3:112083200-112085000 Strong transcription H1 Cell Line embryonic stem cell
46 chr3:112083200-112085800 Strong transcription iPS-20b Cell Line embryonic stem cell
47 chr3:112083200-112086000 Strong transcription HUES6 Cell Line embryonic stem cell
48 chr3:112083400-112085400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr3:112083400-112086200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr3:112083400-112092200 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015