Variant report

Variant	rs58694488
Chromosome Location	chr11:70950136-70950137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70950069..70955056-chr11:70960024..70964626,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35467939	1.00[AMR][1000 genomes]
rs4460834	1.00[AMR][1000 genomes]
rs57853623	1.00[AMR][1000 genomes]
rs58884740	1.00[AMR][1000 genomes]
rs59553442	1.00[AMR][1000 genomes]
rs60150153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70934000-70954200	Weak transcription	Colonic Mucosa	Colon
2	chr11:70935400-70950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:70935800-70955200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:70936200-70952400	Weak transcription	Pancreas	Pancrea
5	chr11:70939200-70951600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:70944400-70952000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:70945400-70951800	Strong transcription	Fetal Intestine Small	intestine
8	chr11:70945800-70952600	Weak transcription	NHLF	lung
9	chr11:70946200-70952200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:70946400-70951400	Strong transcription	HepG2	liver
11	chr11:70946400-70952200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:70946400-70961600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:70947200-70951600	Weak transcription	Lung	lung
14	chr11:70947600-70952600	Weak transcription	Stomach Mucosa	stomach
15	chr11:70947800-70952000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:70948000-70951600	Strong transcription	Fetal Stomach	stomach
17	chr11:70948200-70951800	Weak transcription	Fetal Kidney	kidney
18	chr11:70948200-70952000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:70948400-70951600	Strong transcription	A549	lung
20	chr11:70948600-70950800	Weak transcription	Hela-S3	cervix
21	chr11:70948600-70951600	Strong transcription	Fetal Intestine Large	intestine
22	chr11:70948800-70950600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:70948800-70950800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:70948800-70951600	Strong transcription	Liver	Liver
25	chr11:70949000-70951600	Strong transcription	Gastric	stomach
26	chr11:70949200-70951000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:70949200-70951400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:70949200-70951600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:70949200-70951600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:70949200-70951800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:70949400-70950200	Weak transcription	Placenta	Placenta
32	chr11:70949400-70956600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:70949600-70950400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr11:70949600-70951600	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr11:70949600-70951600	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr11:70949600-70951600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:70949600-70951600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:70949800-70950600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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