Variant report

Variant	rs58696877
Chromosome Location	chr1:225849208-225849209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12037289	0.81[EUR][1000 genomes]
rs12038373	0.83[EUR][1000 genomes]
rs12042273	0.81[EUR][1000 genomes]
rs2296880	0.89[EUR][1000 genomes]
rs56169721	0.81[EUR][1000 genomes]
rs6674621	0.81[EUR][1000 genomes]
rs74149844	0.81[EUR][1000 genomes]
rs7415548	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58696877	LBR	cis	Artery Tibial	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225842000-225865000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:225843000-225852400	Weak transcription	Psoas Muscle	Psoas
3	chr1:225844000-225854000	Weak transcription	Fetal Lung	lung
4	chr1:225845600-225850200	Weak transcription	Lung	lung
5	chr1:225845600-225852200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:225845600-225858400	Weak transcription	Right Atrium	heart
7	chr1:225845800-225849400	Weak transcription	Fetal Heart	heart
8	chr1:225846000-225858000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:225846200-225849400	Weak transcription	NH-A	brain
10	chr1:225846400-225850200	Weak transcription	Aorta	Aorta
11	chr1:225847200-225849400	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:225848200-225850000	Enhancers	Rectal Smooth Muscle	rectum
13	chr1:225848200-225851200	Enhancers	Colon Smooth Muscle	Colon
14	chr1:225848400-225849600	Enhancers	Primary B cells from cord blood	blood
15	chr1:225848400-225854000	Weak transcription	HUVEC	blood vessel
16	chr1:225848800-225850200	Weak transcription	Fetal Stomach	stomach
17	chr1:225849000-225849400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:225849000-225850000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:225849000-225853800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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