Variant report

Variant	rs58699669
Chromosome Location	chr6:5866309-5866310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12333034	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6597168	1.00[ASN][1000 genomes]
rs6901736	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6920981	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5865200-5866600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr6:5865400-5866400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr6:5865400-5866600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:5865400-5866600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:5865400-5866600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:5865400-5866600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:5865600-5866400	Enhancers	Primary T cells from cord blood	blood
8	chr6:5865600-5866600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr6:5865600-5866800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:5865600-5867400	Enhancers	Dnd41	blood
11	chr6:5865800-5866600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:5865800-5867400	Enhancers	Fetal Thymus	thymus
13	chr6:5866000-5866600	Enhancers	Stomach Mucosa	stomach
14	chr6:5866000-5867400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:5866000-5867600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr6:5866200-5866600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:5866200-5867400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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