Variant report

Variant	rs58708570
Chromosome Location	chr12:106100556-106100557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf75-2	chr12:106100552-106100634	ENSG00000257859
2	lnc-C12orf75-2	chr12:106100552-106100634	NR_110110
3	lnc-C12orf75-2	chr12:106100552-106100634	NR_110111

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58756090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv899503	chr12:106021477-106175903	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047810	chr12:106067049-106246582	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1040261	chr12:106068992-106246582	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv899504	chr12:106095906-106135942	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106097400-106101000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:106098000-106100600	Enhancers	Fetal Muscle Trunk	muscle
3	chr12:106098000-106101200	Enhancers	Fetal Heart	heart
4	chr12:106098000-106101400	Enhancers	Fetal Muscle Leg	muscle
5	chr12:106098400-106101400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:106098600-106101600	Enhancers	HSMMtube	muscle
7	chr12:106098800-106101400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:106098800-106101400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr12:106099000-106101000	Enhancers	Psoas Muscle	Psoas
10	chr12:106099000-106101200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:106099200-106100600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr12:106099200-106100600	Enhancers	HUVEC	blood vessel
13	chr12:106099200-106101400	Enhancers	HSMM	muscle
14	chr12:106099400-106100800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr12:106099400-106101000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:106099400-106101000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:106099400-106101400	Enhancers	NH-A	brain
18	chr12:106099600-106100800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:106099600-106100800	Enhancers	Aorta	Aorta
20	chr12:106099600-106101000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:106099600-106101000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr12:106099600-106101000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr12:106099600-106101000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr12:106099600-106101000	Enhancers	Hela-S3	cervix
25	chr12:106099600-106101400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr12:106099600-106101400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr12:106099600-106101600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:106099600-106101600	Enhancers	Fetal Kidney	kidney
29	chr12:106099800-106100600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:106099800-106100600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr12:106099800-106100600	Enhancers	HMEC	breast
32	chr12:106099800-106100600	Enhancers	NHEK	skin
33	chr12:106099800-106100600	Enhancers	Osteobl	bone
34	chr12:106099800-106100800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr12:106099800-106101000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr12:106099800-106101000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr12:106099800-106101000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr12:106099800-106101200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr12:106099800-106101400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr12:106100000-106100800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr12:106100000-106100800	Enhancers	NHLF	lung
42	chr12:106100000-106101000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr12:106100200-106100800	Weak transcription	Fetal Brain Male	brain
44	chr12:106100200-106100800	Weak transcription	Fetal Lung	lung
45	chr12:106100200-106101000	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr12:106100200-106101200	Weak transcription	Adipose Nuclei	Adipose

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