Variant report

Variant	rs58711609
Chromosome Location	chr2:11605381-11605382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11483291..11485571-chr2:11604286..11606431,2	MCF-7	breast:
2	chr2:11292916..11295580-chr2:11604494..11607840,3	MCF-7	breast:
3	chr2:11604255..11606398-chr2:11886112..11888104,2	K562	blood:
4	chr2:11604833..11608003-chr2:11882353..11886330,4	K562	blood:
5	chr2:11604369..11605890-chr2:11610890..11612437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230790	Chromatin interaction
ENSG00000162976	Chromatin interaction
ENSG00000134318	Chromatin interaction
ENSG00000134324	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56109303	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11587200-11605400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:11587600-11605400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:11589200-11605400	Weak transcription	Thymus	Thymus
4	chr2:11589400-11605400	Weak transcription	Fetal Kidney	kidney
5	chr2:11589600-11605400	Weak transcription	Esophagus	oesophagus
6	chr2:11590200-11605400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:11593400-11605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:11599600-11605400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:11601800-11605400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:11602000-11605400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:11602200-11605400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:11603200-11605600	Enhancers	Spleen	Spleen
13	chr2:11603600-11605400	Enhancers	Brain Substantia Nigra	brain
14	chr2:11603800-11605400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr2:11603800-11605400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:11603800-11605400	Enhancers	Small Intestine	intestine
17	chr2:11603800-11605800	Enhancers	Fetal Heart	heart
18	chr2:11604000-11605400	Enhancers	Fetal Brain Male	brain
19	chr2:11604200-11605400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:11604200-11605400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:11604200-11605400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr2:11604200-11605400	Enhancers	Lung	lung
23	chr2:11604200-11605600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:11604400-11605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:11604400-11605400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:11604400-11605400	Weak transcription	Aorta	Aorta
27	chr2:11604400-11605400	Enhancers	Colon Smooth Muscle	Colon
28	chr2:11604400-11605400	Enhancers	Fetal Stomach	stomach
29	chr2:11604400-11605400	Weak transcription	Gastric	stomach
30	chr2:11604400-11605400	Weak transcription	Left Ventricle	heart
31	chr2:11604400-11605400	Weak transcription	Pancreas	Pancrea
32	chr2:11604400-11605400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr2:11604400-11605400	Active TSS	GM12878-XiMat	blood
34	chr2:11604400-11605400	Weak transcription	NHDF-Ad	bronchial
35	chr2:11604400-11606200	Flanking Active TSS	Dnd41	blood
36	chr2:11604400-11606600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:11604400-11607000	Active TSS	Ovary	ovary
38	chr2:11604400-11607000	Active TSS	Psoas Muscle	Psoas
39	chr2:11604600-11605400	Enhancers	Placenta	Placenta
40	chr2:11604600-11606800	Active TSS	Brain Angular Gyrus	brain
41	chr2:11604600-11607200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:11604800-11605400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:11604800-11605400	Enhancers	Primary B cells from cord blood	blood
44	chr2:11604800-11605400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr2:11604800-11605400	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr2:11604800-11605400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr2:11604800-11605400	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr2:11604800-11605400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:11604800-11605400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:11604800-11605400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links