Variant report

Variant	rs58716628
Chromosome Location	chr7:147108118-147108119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58307467	0.93[AFR][1000 genomes]
rs61014540	0.93[AFR][1000 genomes]
rs73473282	0.85[AFR][1000 genomes]
rs73473284	0.98[AFR][1000 genomes]
rs7795970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147106200-147108800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:147107600-147108400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:147107600-147108400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:147107600-147110400	Enhancers	NHDF-Ad	bronchial
6	chr7:147107800-147110200	Enhancers	HSMMtube	muscle
7	chr7:147107800-147111400	Enhancers	Osteobl	bone
8	chr7:147108000-147108200	Enhancers	Fetal Muscle Leg	muscle
9	chr7:147108000-147110000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:147108000-147110200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:147108000-147110200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:147108000-147110200	Enhancers	HSMM	muscle
13	chr7:147108000-147111200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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