Variant report

Variant	rs58716847
Chromosome Location	chr9:16985747-16985748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10118864	1.00[AMR][1000 genomes]
rs7039735	1.00[AMR][1000 genomes]
rs73416342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892655	chr9:16933037-16986264	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv466268	chr9:16958700-17002275	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv613691	chr9:16958700-17002275	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1034657	chr9:16963863-16992325	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16983800-16985800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:16984000-16985800	Weak transcription	NHLF	lung
3	chr9:16984200-16987200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:16984400-16986000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:16984400-16988000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:16984600-16985800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:16984600-16986000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:16984800-16986000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:16984800-16986000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:16984800-16986000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:16985000-16986000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:16985200-16986200	Weak transcription	Aorta	Aorta
13	chr9:16985400-16985800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:16985400-16987400	Enhancers	Fetal Stomach	stomach
15	chr9:16985600-16986000	Enhancers	Stomach Smooth Muscle	stomach
16	chr9:16985600-16986200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:16985600-16986200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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