Variant report

Variant	rs58723399
Chromosome Location	chr11:75053940-75053941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75052872..75055185-chr11:75109817..75111998,3	K562	blood:
2	chr11:75053779..75054683-chr11:75062551..75063237,2	MCF-7	breast:
3	chr11:75043329..75045889-chr11:75052595..75054631,2	MCF-7	breast:
4	chr11:75053294..75054862-chr11:75117237..75118876,2	MCF-7	breast:
5	chr11:75053704..75056779-chr11:75098443..75101386,3	MCF-7	breast:
6	chr11:75053161..75054770-chr11:75139642..75142565,2	MCF-7	breast:
7	chr11:75050760..75054714-chr11:75085548..75088941,3	MCF-7	breast:
8	chr11:75040463..75042023-chr11:75053067..75055611,2	MCF-7	breast:
9	chr11:75044357..75045313-chr11:75053472..75054293,2	MCF-7	breast:
10	chr11:75053225..75057197-chr11:75082707..75085103,4	MCF-7	breast:
11	chr11:75053451..75054305-chr11:75095287..75096102,2	MCF-7	breast:
12	chr11:75053722..75054662-chr11:75061884..75062746,3	MCF-7	breast:
13	chr11:75052872..75055185-chr11:75110340..75111998,2	K562	blood:
14	chr11:75044563..75045390-chr11:75053690..75054859,5	MCF-7	breast:
15	chr11:75053722..75054569-chr11:75062107..75062746,2	MCF-7	breast:
16	chr11:74995398..74998082-chr11:75052769..75055576,2	MCF-7	breast:
17	chr11:75047858..75058236-chr11:75058819..75065197,25	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000149243	Chromatin interaction
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35948518	1.00[AFR][1000 genomes]
rs55993063	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
2	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
3	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
4	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75039400-75060800	Enhancers	Placenta	Placenta
2	chr11:75043800-75054000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:75044200-75055400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:75044200-75055600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:75044200-75055800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:75044200-75056600	Enhancers	Esophagus	oesophagus
7	chr11:75044200-75056800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:75044200-75060400	Genic enhancers	Fetal Stomach	stomach
9	chr11:75044400-75055200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:75044400-75056400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:75044400-75057200	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:75046400-75061200	Enhancers	Fetal Thymus	thymus
13	chr11:75046800-75060200	Enhancers	Brain Anterior Caudate	brain
14	chr11:75046800-75061600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:75047000-75054400	Enhancers	Brain Substantia Nigra	brain
16	chr11:75047000-75059600	Enhancers	Pancreas	Pancrea
17	chr11:75047000-75061200	Enhancers	Left Ventricle	heart
18	chr11:75047000-75061200	Enhancers	Stomach Mucosa	stomach
19	chr11:75047200-75060400	Enhancers	Brain Angular Gyrus	brain
20	chr11:75047400-75055400	Enhancers	Fetal Intestine Large	intestine
21	chr11:75047600-75054400	Enhancers	Gastric	stomach
22	chr11:75047600-75056000	Enhancers	Fetal Muscle Leg	muscle
23	chr11:75047600-75060600	Enhancers	Right Atrium	heart
24	chr11:75047800-75054400	Enhancers	Right Ventricle	heart
25	chr11:75047800-75060600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:75047800-75060800	Genic enhancers	Fetal Intestine Small	intestine
27	chr11:75048000-75055600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:75048000-75055800	Enhancers	Lung	lung
29	chr11:75048000-75058200	Enhancers	Primary B cells from cord blood	blood
30	chr11:75048000-75061600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr11:75048200-75054800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:75048400-75054600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:75048400-75061000	Enhancers	Liver	Liver
34	chr11:75048600-75058400	Enhancers	Small Intestine	intestine
35	chr11:75049000-75054000	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr11:75049000-75056000	Enhancers	Ovary	ovary
37	chr11:75049200-75055400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr11:75049400-75054600	Enhancers	K562	blood
39	chr11:75049400-75055800	Enhancers	Fetal Brain Female	brain
40	chr11:75049600-75054200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:75049800-75056600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr11:75050400-75054000	Enhancers	HepG2	liver
43	chr11:75050400-75056200	Enhancers	NHLF	lung
44	chr11:75050400-75057600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:75050600-75056200	Enhancers	NHDF-Ad	bronchial
46	chr11:75050800-75059200	Enhancers	Fetal Lung	lung
47	chr11:75051000-75054800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr11:75051000-75054800	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr11:75051000-75055000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:75051000-75056400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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