Variant report

Variant	rs58725196
Chromosome Location	chr2:213018306-213018307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11886035	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11902414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16847746	0.82[AFR][1000 genomes]
rs6435693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6435694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6732730	0.94[AFR][1000 genomes]
rs6738053	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7569196	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7579746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213013000-213018400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:213017000-213019200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:213017600-213021400	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links