Variant report

Variant	rs58740162
Chromosome Location	chr2:86620295-86620296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86616684..86621383-chr2:86622282..86625754,5	K562	blood:
2	chr2:86619507..86623794-chr2:86667300..86670065,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115548	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10181540	0.88[ASN][1000 genomes]
rs1105862	1.00[ASN][1000 genomes]
rs1105863	1.00[ASN][1000 genomes]
rs1105864	1.00[ASN][1000 genomes]
rs13405197	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41318646	0.84[ASN][1000 genomes]
rs56194753	0.81[EUR][1000 genomes]
rs58449699	1.00[ASN][1000 genomes]
rs58914241	0.84[ASN][1000 genomes]
rs59064682	0.84[ASN][1000 genomes]
rs59714766	1.00[ASN][1000 genomes]
rs6547681	1.00[ASN][1000 genomes]
rs6547683	1.00[ASN][1000 genomes]
rs6547684	1.00[ASN][1000 genomes]
rs6707865	1.00[ASN][1000 genomes]
rs6709505	0.85[ASN][1000 genomes]
rs6730867	1.00[ASN][1000 genomes]
rs6731264	1.00[ASN][1000 genomes]
rs6731801	1.00[ASN][1000 genomes]
rs6736342	1.00[ASN][1000 genomes]
rs6744590	1.00[ASN][1000 genomes]
rs6748880	1.00[ASN][1000 genomes]
rs6756078	0.88[ASN][1000 genomes]
rs72928446	1.00[ASN][1000 genomes]
rs73945294	0.90[ASN][1000 genomes]
rs73949503	0.84[ASN][1000 genomes]
rs73949512	0.84[ASN][1000 genomes]
rs7568093	0.88[ASN][1000 genomes]
rs7574555	0.85[ASN][1000 genomes]
rs870372	1.00[ASN][1000 genomes]
rs870373	1.00[ASN][1000 genomes]
rs870374	1.00[ASN][1000 genomes]
rs870375	1.00[ASN][1000 genomes]
rs949922	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	esv18769	chr2:86619882-86620685	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86619600-86620800	Enhancers	Left Ventricle	heart
2	chr2:86619600-86621200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:86619600-86621600	Enhancers	Fetal Intestine Large	intestine
4	chr2:86619600-86622000	Enhancers	Fetal Intestine Small	intestine
5	chr2:86619800-86620400	Enhancers	Fetal Heart	heart
6	chr2:86619800-86621800	Enhancers	HSMMtube	muscle
7	chr2:86619800-86622800	Enhancers	Psoas Muscle	Psoas
8	chr2:86620000-86621000	Enhancers	Duodenum Mucosa	Duodenum
9	chr2:86620000-86621000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:86620000-86621600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:86620000-86621600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr2:86620000-86621600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr2:86620000-86621600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr2:86620000-86621600	Enhancers	Colonic Mucosa	Colon
15	chr2:86620000-86621600	Enhancers	HSMM	muscle
16	chr2:86620200-86621000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:86620200-86621200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:86620200-86621400	Enhancers	Fetal Lung	lung
19	chr2:86620200-86621400	Enhancers	Stomach Mucosa	stomach
20	chr2:86620200-86621600	Enhancers	Primary T cells from cord blood	blood
21	chr2:86620200-86621600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr2:86620200-86621600	Enhancers	Fetal Thymus	thymus
23	chr2:86620200-86621600	Enhancers	Pancreas	Pancrea
24	chr2:86620200-86621600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr2:86620200-86621600	Enhancers	Hela-S3	cervix
26	chr2:86620200-86621800	Enhancers	Skeletal Muscle Female	skeletal muscle

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