Variant report

Variant	rs58747700
Chromosome Location	chr7:11801553-11801554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10265139	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10276715	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10499405	0.92[EUR][1000 genomes]
rs10950366	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12667493	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12667512	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12671899	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1465007	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1465008	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1467344	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1467345	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1526518	0.87[ASN][1000 genomes]
rs1526521	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1526522	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1526532	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1526533	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1526555	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534234	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17165146	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17165147	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17165166	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17165172	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17165181	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2355076	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2355077	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2355085	0.87[ASN][1000 genomes]
rs4236265	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4506091	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4721008	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4721010	0.91[EUR][1000 genomes]
rs55786242	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55860284	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56310669	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56835192	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57645050	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60211624	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62433414	0.91[ASN][1000 genomes]
rs6460838	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6460839	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66741322	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66784951	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66791240	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67195807	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67255535	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67388503	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67907409	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68076870	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6957349	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6960116	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6973826	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6973931	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73057039	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73298449	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7788213	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7795628	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7802597	0.96[EUR][1000 genomes]
rs9691513	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9691520	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs999879	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs999880	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887612	chr7:11756776-11806289	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887613	chr7:11766964-11806289	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11798600-11803000	Weak transcription	Placenta	Placenta
2	chr7:11800400-11811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:11800800-11801600	Enhancers	A549	lung

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