Variant report

Variant	rs587526
Chromosome Location	chr18:25662467-25662468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1078501	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11083248	0.83[CHB][hapmap]
rs1122356	0.88[CHB][hapmap]
rs1148376	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11564297	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11564316	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11564396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11564397	0.82[CHB][hapmap]
rs11564400	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11564409	0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs11873053	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1220015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1220016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1220019	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1220146	0.86[CEU][hapmap]
rs1228419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1234682	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1373136	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1373138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17446316	0.96[ASN][1000 genomes]
rs17463295	0.83[CHB][hapmap]
rs17468531	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1816825	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2920447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4800840	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs490820	0.88[CHB][hapmap]
rs500643	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs533602	0.94[CHB][hapmap]
rs539075	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs565509	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs568575	0.94[CHB][hapmap]
rs576467	0.86[CEU][hapmap];0.88[CHB][hapmap];0.80[EUR][1000 genomes]
rs584936	0.83[CHB][hapmap]
rs587613	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs597591	0.88[CHB][hapmap]
rs602819	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs610906	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs614966	0.88[CHB][hapmap]
rs623234	0.85[CEU][hapmap];0.88[CHB][hapmap];0.80[EUR][1000 genomes]
rs643555	0.88[CHB][hapmap]
rs647733	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs656642	0.88[CHB][hapmap]
rs665651	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs665781	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs673008	0.88[CHB][hapmap]
rs683457	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694943	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7230771	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7237382	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8087457	0.85[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs8087860	0.94[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs8091314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9635986	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9789154	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:25651600-25665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:25652600-25663800	Weak transcription	Right Ventricle	heart
5	chr18:25654000-25666000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:25656200-25663000	Weak transcription	Brain Angular Gyrus	brain
8	chr18:25656200-25663000	Weak transcription	Brain Anterior Caudate	brain
9	chr18:25656400-25662600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr18:25657200-25663800	Weak transcription	Brain Hippocampus Middle	brain
11	chr18:25657200-25666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:25657400-25663200	Weak transcription	Brain Substantia Nigra	brain
13	chr18:25657800-25666000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr18:25658600-25666800	Weak transcription	Fetal Kidney	kidney
15	chr18:25658800-25666600	Weak transcription	HSMMtube	muscle
16	chr18:25659000-25662800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr18:25659000-25664600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr18:25659000-25665600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr18:25659200-25662800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr18:25660200-25664600	Weak transcription	Right Atrium	heart
21	chr18:25660200-25664800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:25660200-25666200	Weak transcription	Osteobl	bone
23	chr18:25660200-25666600	Weak transcription	HSMM	muscle
24	chr18:25660200-25666800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr18:25660200-25666800	Weak transcription	Fetal Brain Male	brain
26	chr18:25661000-25663600	Weak transcription	Brain Germinal Matrix	brain
27	chr18:25661000-25663800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:25661000-25665200	Weak transcription	NH-A	brain
29	chr18:25661000-25666200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr18:25661200-25662800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr18:25661200-25664600	Weak transcription	Left Ventricle	heart
32	chr18:25661200-25666800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr18:25661400-25662600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr18:25661400-25662800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr18:25661400-25663800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr18:25661400-25664000	Weak transcription	Fetal Heart	heart
37	chr18:25661400-25664200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr18:25661400-25665400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr18:25661400-25666400	Weak transcription	HepG2	liver
40	chr18:25661600-25662800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr18:25661800-25662800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr18:25661800-25663000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr18:25662000-25662800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr18:25662000-25662800	Weak transcription	A549	lung
45	chr18:25662000-25663400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr18:25662000-25667000	Weak transcription	NHLF	lung

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