Variant report

Variant	rs58755454
Chromosome Location	chr11:84579535-84579536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10466727	1.00[ASN][1000 genomes]
rs10466728	1.00[ASN][1000 genomes]
rs10501579	1.00[ASN][1000 genomes]
rs10898316	1.00[ASN][1000 genomes]
rs11234227	1.00[ASN][1000 genomes]
rs11234229	1.00[ASN][1000 genomes]
rs11234233	1.00[ASN][1000 genomes]
rs11600059	1.00[ASN][1000 genomes]
rs11601217	1.00[ASN][1000 genomes]
rs11603955	1.00[ASN][1000 genomes]
rs11605352	1.00[ASN][1000 genomes]
rs12269779	1.00[ASN][1000 genomes]
rs12269784	1.00[ASN][1000 genomes]
rs12273398	1.00[ASN][1000 genomes]
rs12273440	1.00[ASN][1000 genomes]
rs12275261	1.00[ASN][1000 genomes]
rs12276815	1.00[ASN][1000 genomes]
rs12280451	1.00[ASN][1000 genomes]
rs12280968	1.00[ASN][1000 genomes]
rs12284441	1.00[ASN][1000 genomes]
rs12290560	1.00[ASN][1000 genomes]
rs12290572	1.00[ASN][1000 genomes]
rs12290883	1.00[ASN][1000 genomes]
rs12295559	1.00[ASN][1000 genomes]
rs12295785	1.00[ASN][1000 genomes]
rs12295920	1.00[ASN][1000 genomes]
rs17147659	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147674	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147685	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147690	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147698	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147704	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147709	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147713	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147716	1.00[ASN][1000 genomes]
rs17147742	1.00[ASN][1000 genomes]
rs17147743	1.00[ASN][1000 genomes]
rs17147746	0.93[ASN][1000 genomes]
rs17147761	1.00[ASN][1000 genomes]
rs17147767	1.00[ASN][1000 genomes]
rs17147795	1.00[ASN][1000 genomes]
rs17159857	0.93[ASN][1000 genomes]
rs1943718	1.00[ASN][1000 genomes]
rs1943719	1.00[ASN][1000 genomes]
rs1943720	1.00[ASN][1000 genomes]
rs1943721	1.00[ASN][1000 genomes]
rs2156516	1.00[ASN][1000 genomes]
rs4453254	1.00[ASN][1000 genomes]
rs4491252	1.00[ASN][1000 genomes]
rs4497430	1.00[ASN][1000 genomes]
rs4550245	1.00[ASN][1000 genomes]
rs4551791	1.00[ASN][1000 genomes]
rs56994799	1.00[ASN][1000 genomes]
rs57643378	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57714409	1.00[ASN][1000 genomes]
rs58613335	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123032	0.93[ASN][1000 genomes]
rs7940920	1.00[ASN][1000 genomes]
rs7943571	0.93[ASN][1000 genomes]
rs9971489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv817205	chr11:84497319-84628963	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv898040	chr11:84524697-84600597	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv555625	chr11:84547441-84629013	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv555627	chr11:84547595-84581522	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2757458	chr11:84556678-84593655	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2759844	chr11:84556678-84593655	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84577600-84582200	Weak transcription	Psoas Muscle	Psoas
2	chr11:84578400-84580000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:84578400-84582000	Weak transcription	NH-A	brain
4	chr11:84578400-84584200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:84579200-84579800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:84579200-84580000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:84579400-84579600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:84579400-84579600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:84579400-84579600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:84579400-84579800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:84579400-84579800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:84579400-84579800	Enhancers	Osteobl	bone
13	chr11:84579400-84580000	Enhancers	NHDF-Ad	bronchial
14	chr11:84579400-84580600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links