Variant report

Variant	rs58757062
Chromosome Location	chr4:129976930-129976931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55800030	1.00[AFR][1000 genomes]
rs56107587	1.00[AFR][1000 genomes]
rs57959838	1.00[AFR][1000 genomes]
rs73847376	1.00[AFR][1000 genomes]
rs73847377	1.00[AFR][1000 genomes]
rs73847388	1.00[AFR][1000 genomes]
rs73847393	1.00[AFR][1000 genomes]
rs73847396	1.00[AFR][1000 genomes]
rs73848903	0.87[AFR][1000 genomes]
rs73848904	0.87[AFR][1000 genomes]
rs73848905	0.87[AFR][1000 genomes]
rs73848912	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129945600-129981800	Weak transcription	Thymus	Thymus
2	chr4:129975600-129977400	ZNF genes & repeats	Fetal Lung	lung
3	chr4:129976000-129978000	ZNF genes & repeats	Liver	Liver
4	chr4:129976200-129977200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:129976200-129977400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:129976200-129977400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:129976200-129977400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:129976200-129977400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:129976200-129977600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr4:129976200-129978000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:129976200-129979000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr4:129976400-129977000	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr4:129976400-129977200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
14	chr4:129976400-129977200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:129976400-129977400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:129976400-129977400	ZNF genes & repeats	Fetal Stomach	stomach
17	chr4:129976600-129977000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:129976600-129977400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:129976600-129977400	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr4:129976800-129977400	ZNF genes & repeats	Aorta	Aorta
21	chr4:129976800-129977400	ZNF genes & repeats	Gastric	stomach

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