Variant report

Variant	rs58757279
Chromosome Location	chr8:105157825-105157826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105156123..105158477-chr8:105160903..105163051,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1005685	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10505056	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12542414	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12542450	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12542774	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12547371	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12549681	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12681161	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1447066	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1562400	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1562401	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1823168	0.81[EUR][1000 genomes]
rs1838936	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2028947	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2121551	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2121552	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2879854	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2879855	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56196526	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72685028	0.81[EUR][1000 genomes]
rs72685029	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv1847227	chr8:105025912-105251147	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891251	chr8:105054446-105283340	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv891252	chr8:105106882-105227985	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105151600-105160800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:105156000-105161000	Weak transcription	Adipose Nuclei	Adipose
3	chr8:105156400-105160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:105156400-105188400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:105157000-105160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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