Variant report

Variant	rs587614025
Chromosome Location	chr1:150512654-150512655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150502838..150505562-chr1:150511108..150512922,2	K562	blood:
2	chr1:150510592..150512874-chr1:150550671..150552191,2	MCF-7	breast:
3	chr1:150509650..150512738-chr1:150519728..150523088,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143382	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000225996	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
2	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
3	esv1814231	chr1:150479528-150540117	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	71 gene(s)	inside rSNPs	diseases
4	esv3399264	chr1:150512378-150515976	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150505600-150516000	Weak transcription	Fetal Stomach	stomach
2	chr1:150505600-150516200	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:150505600-150521000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:150505800-150516000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:150505800-150521000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:150508800-150516000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:150508800-150516000	Weak transcription	Right Atrium	heart
8	chr1:150509000-150516400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:150509800-150516000	Weak transcription	NHLF	lung
10	chr1:150510600-150516000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:150511000-150518200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:150511200-150515000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:150511200-150515200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:150511200-150516000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:150511200-150516000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:150511200-150516400	Weak transcription	Adipose Nuclei	Adipose
17	chr1:150511200-150521000	Weak transcription	A549	lung
18	chr1:150511400-150516000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:150511400-150516000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:150511400-150516200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:150511400-150520800	Weak transcription	Hela-S3	cervix
22	chr1:150511400-150521000	Weak transcription	NHDF-Ad	bronchial
23	chr1:150511600-150514800	Weak transcription	HepG2	liver
24	chr1:150511600-150516000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:150511600-150516000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr1:150511600-150516000	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:150511600-150516000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr1:150511600-150516000	Weak transcription	HSMM	muscle
29	chr1:150511600-150516000	Weak transcription	HSMMtube	muscle
30	chr1:150511600-150516200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:150511600-150516200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:150511600-150521200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr1:150511800-150516000	Weak transcription	Esophagus	oesophagus
34	chr1:150511800-150518000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr1:150512000-150516000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr1:150512000-150517600	Weak transcription	Placenta	Placenta
37	chr1:150512600-150513000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links