Variant report

Variant rs587615229
Chromosome Location chr1:145004788-145004789
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144992600-145007800 Weak transcription HMEC breast
2 chr1:144995000-145005600 Weak transcription NH-A brain
3 chr1:144995800-145004800 Weak transcription Fetal Intestine Small intestine
4 chr1:144995800-145008600 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:144996600-145008600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr1:144997400-145007800 Weak transcription NHEK skin
7 chr1:144998000-145009000 Weak transcription Stomach Mucosa stomach
8 chr1:144999200-145008600 Weak transcription Rectal Smooth Muscle rectum
9 chr1:145000400-145008400 Genic enhancers Muscle Satellite Cultured Cells --
10 chr1:145000400-145010200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:145000600-145008000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:145000800-145006000 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:145000800-145009000 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr1:145000800-145009000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:145000800-145021600 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:145001000-145004800 Weak transcription Fetal Stomach stomach
17 chr1:145001000-145005600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr1:145001000-145005800 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr1:145001000-145006000 Weak transcription ES-WA7 Cell Line embryonic stem cell
20 chr1:145001000-145006000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:145001000-145006000 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr1:145001000-145006000 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr1:145001000-145006000 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr1:145001000-145008000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:145001000-145009000 Weak transcription Primary hematopoietic stem cells blood
26 chr1:145001200-145006200 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr1:145001400-145008400 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr1:145001600-145008400 Weak transcription Primary B cells from cord blood blood
29 chr1:145002000-145005000 Genic enhancers Skeletal Muscle Female skeletal muscle
30 chr1:145002400-145004800 Genic enhancers Osteobl bone
31 chr1:145002800-145004800 Enhancers Sigmoid Colon Sigmoid Colon
32 chr1:145002800-145006200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:145002800-145012000 Weak transcription Pancreas Pancrea
34 chr1:145002800-145024200 Weak transcription Gastric stomach
35 chr1:145003200-145005000 Genic enhancers HSMM muscle
36 chr1:145003200-145005600 Enhancers Fetal Lung lung
37 chr1:145003200-145006600 Genic enhancers Aorta Aorta
38 chr1:145003400-145005600 Weak transcription Fetal Brain Male brain
39 chr1:145003600-145004800 Enhancers Primary T cells from cord blood blood
40 chr1:145003600-145005000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
41 chr1:145003600-145006000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:145003800-145004800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
43 chr1:145003800-145004800 Enhancers Primary T helper cells fromperipheralblood blood
44 chr1:145003800-145004800 Genic enhancers Primary T killer memory cells from peripheral blood blood
45 chr1:145003800-145004800 Genic enhancers Brain Cingulate Gyrus brain
46 chr1:145003800-145004800 Flanking Active TSS K562 blood
47 chr1:145004000-145004800 Enhancers Primary T helper cells PMA-I stimulated --
48 chr1:145004000-145004800 Enhancers Primary T helper 17 cells PMA-I stimulated --
49 chr1:145004000-145005000 Enhancers Fetal Heart heart
50 chr1:145004000-145014800 Strong transcription Placenta Placenta

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