Variant report

Variant	rs58762276
Chromosome Location	chr9:100960264-100960265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100959852..100962338-chr9:101552599..101554249,2	K562	blood:
2	chr9:100954360..100957375-chr9:100960108..100963895,4	K562	blood:
3	chr9:100959996..100962412-chr9:101015683..101018543,2	K562	blood:
4	chr9:100954612..100957574-chr9:100959524..100962967,5	K562	blood:

Variant related genes	Relation type
ENSG00000165138	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000106789	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12001270	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12344498	0.94[EUR][1000 genomes]
rs12344678	0.97[EUR][1000 genomes]
rs12349129	0.94[EUR][1000 genomes]
rs12349172	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs16913609	0.89[EUR][1000 genomes]
rs2117609	1.00[ASN][1000 genomes]
rs2117610	1.00[ASN][1000 genomes]
rs28635946	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs55710345	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56350443	0.87[EUR][1000 genomes]
rs56675709	0.87[EUR][1000 genomes]
rs57756870	0.87[EUR][1000 genomes]
rs57761120	0.89[EUR][1000 genomes]
rs58302299	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58653026	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs60887768	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7033797	0.84[EUR][1000 genomes]
rs73498781	0.87[EUR][1000 genomes]
rs73498784	0.87[EUR][1000 genomes]
rs73503038	0.94[EUR][1000 genomes]
rs73657117	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858416	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv520067	chr9:100927161-100978542	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100955800-100960400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:100955800-100960600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:100955800-100960600	Weak transcription	Gastric	stomach
4	chr9:100955800-100960800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:100955800-100961000	Weak transcription	HSMMtube	muscle
6	chr9:100955800-100961400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:100955800-100961400	Weak transcription	Brain Substantia Nigra	brain
8	chr9:100955800-100961400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:100955800-100961400	Weak transcription	Thymus	Thymus
10	chr9:100955800-100961600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:100955800-100961600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:100955800-100962000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:100955800-100962000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:100955800-100962000	Weak transcription	HSMM	muscle
15	chr9:100955800-100964200	Weak transcription	Pancreas	Pancrea
16	chr9:100955800-100965200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:100955800-100965200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:100955800-100970400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:100955800-100970400	Weak transcription	Left Ventricle	heart
20	chr9:100955800-100970400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:100955800-100970600	Weak transcription	Ovary	ovary
22	chr9:100955800-100970600	Weak transcription	Right Ventricle	heart
23	chr9:100955800-100975000	Weak transcription	Primary B cells from cord blood	blood
24	chr9:100955800-100975000	Weak transcription	NHDF-Ad	bronchial
25	chr9:100955800-100975200	Weak transcription	NH-A	brain
26	chr9:100955800-100975600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:100955800-101003200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:100956000-100960400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:100956000-100960600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr9:100956000-100960600	Weak transcription	Colonic Mucosa	Colon
31	chr9:100956000-100961000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:100956000-100961200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:100956000-100961400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:100956000-100961400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr9:100956000-100961400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr9:100956000-100961600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:100956000-100961600	Weak transcription	NHLF	lung
38	chr9:100956000-100962000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr9:100956000-100965000	Weak transcription	Adipose Nuclei	Adipose
40	chr9:100956000-100969800	Weak transcription	Primary T cells from cord blood	blood
41	chr9:100956000-100970000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:100956000-100970600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:100956000-100971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:100956000-100981000	Weak transcription	A549	lung
45	chr9:100956200-100960400	Weak transcription	Liver	Liver
46	chr9:100956200-100961000	Weak transcription	Brain Hippocampus Middle	brain
47	chr9:100956200-100961200	Weak transcription	Brain Anterior Caudate	brain
48	chr9:100956200-100961200	Weak transcription	Fetal Intestine Large	intestine
49	chr9:100956200-100961200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr9:100956200-100961800	Weak transcription	Hela-S3	cervix

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