Variant report

Variant	rs58762879
Chromosome Location	chr1:213116874-213116875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs41296670	1.00[AMR][1000 genomes]
rs41300987	1.00[AMR][1000 genomes]
rs41301023	1.00[AMR][1000 genomes]
rs57401293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58318035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213107800-213119400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:213115600-213117000	Enhancers	HepG2	liver
3	chr1:213116000-213121200	Enhancers	GM12878-XiMat	blood
4	chr1:213116400-213123400	Weak transcription	Right Atrium	heart
5	chr1:213116600-213117000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:213116600-213118600	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:213116800-213117000	Enhancers	Fetal Intestine Small	intestine
8	chr1:213116800-213118000	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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