Variant report

Variant	rs58762913
Chromosome Location	chr2:30907741-30907742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1901907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30897400-30909600	Weak transcription	Aorta	Aorta
2	chr2:30902400-30954000	Weak transcription	Gastric	stomach
3	chr2:30902600-30912000	Weak transcription	Spleen	Spleen
4	chr2:30902600-30915600	Weak transcription	NHDF-Ad	bronchial
5	chr2:30906200-30909000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:30906400-30908200	Enhancers	Primary B cells from cord blood	blood
7	chr2:30907000-30908200	Enhancers	Fetal Brain Female	brain
8	chr2:30907000-30909800	Enhancers	Fetal Muscle Leg	muscle
9	chr2:30907200-30908000	Enhancers	Fetal Lung	lung
10	chr2:30907200-30908600	Enhancers	Fetal Brain Male	brain
11	chr2:30907200-30911600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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