Variant report

Variant	rs587630119
Chromosome Location	chr1:150046195-150046196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150035483..150047454-chr1:150129931..150138567,28	MCF-7	breast:
2	chr1:149898320..149901197-chr1:150045143..150046791,2	MCF-7	breast:
3	chr1:150044965..150047387-chr1:150136766..150139842,3	MCF-7	breast:
4	chr1:150045133..150046720-chr1:150047065..150048856,2	MCF-7	breast:
5	chr1:150045026..150046248-chr1:150134083..150135043,5	MCF-7	breast:
6	chr1:150032474..150034283-chr1:150044859..150046740,2	K562	blood:
7	chr1:150044299..150047300-chr1:150141169..150143269,3	MCF-7	breast:
8	chr1:150043719..150046734-chr1:150113127..150116158,3	MCF-7	breast:
9	chr1:149858840..149861713-chr1:150044592..150047147,2	MCF-7	breast:
10	chr1:150040162..150042986-chr1:150044967..150046584,2	K562	blood:
11	chr1:149982418..149984722-chr1:150044513..150046675,2	K562	blood:
12	chr1:150043953..150046600-chr1:150048139..150050720,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163113	Chromatin interaction
ENSG00000023902	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000143368	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	esv2605621	chr1:150046106-150047644	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150040000-150050200	Weak transcription	Spleen	Spleen
2	chr1:150040200-150090800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:150040400-150046200	Weak transcription	Fetal Thymus	thymus
4	chr1:150040400-150047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:150040400-150047800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:150040400-150047800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:150040400-150049800	Weak transcription	Ovary	ovary
8	chr1:150040400-150049800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:150040400-150050000	Weak transcription	Lung	lung
10	chr1:150040400-150056400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:150040400-150061600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:150040400-150078800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:150040400-150082800	Weak transcription	Small Intestine	intestine
14	chr1:150040400-150086800	Weak transcription	Esophagus	oesophagus
15	chr1:150040400-150121400	Weak transcription	Pancreas	Pancrea
16	chr1:150040600-150046200	Weak transcription	Colonic Mucosa	Colon
17	chr1:150040600-150048200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:150040600-150072200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:150040600-150092000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:150040800-150048400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr1:150040800-150048800	Weak transcription	Primary B cells from cord blood	blood
22	chr1:150040800-150049000	Weak transcription	Primary T cells from cord blood	blood
23	chr1:150040800-150049800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:150040800-150049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:150040800-150049800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:150040800-150054400	Weak transcription	Aorta	Aorta
27	chr1:150041000-150047400	Strong transcription	Placenta	Placenta
28	chr1:150041000-150047600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:150041000-150048200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr1:150041000-150048200	Weak transcription	Fetal Brain Female	brain
31	chr1:150041000-150048800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:150041000-150049200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr1:150041000-150049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr1:150041000-150049800	Weak transcription	Thymus	Thymus
35	chr1:150041000-150049800	Weak transcription	HSMMtube	muscle
36	chr1:150041000-150053600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr1:150041000-150064000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr1:150041000-150114400	Weak transcription	Right Ventricle	heart
39	chr1:150041200-150046600	Weak transcription	Fetal Intestine Large	intestine
40	chr1:150041200-150048800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:150041200-150049200	Weak transcription	HepG2	liver
42	chr1:150041200-150049800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:150041200-150054800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:150041400-150047400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:150041400-150048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:150041400-150048800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr1:150041400-150049200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr1:150041400-150049200	Weak transcription	Brain Substantia Nigra	brain
49	chr1:150041400-150049200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:150041400-150049200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links