Variant report

Variant	rs587652390
Chromosome Location	chr1:150812218-150812219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150788780..150790984-chr1:150810777..150813008,2	MCF-7	breast:
2	chr1:150807087..150808986-chr1:150811625..150814317,2	MCF-7	breast:
3	chr1:150803170..150805446-chr1:150810913..150813203,2	K562	blood:
4	chr1:150800531..150803502-chr1:150811550..150815655,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143437	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	nsv872420	chr1:150786038-150847647	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1010875	chr1:150796816-150845827	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	esv1793983	chr1:150804748-150825924	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	esv1797905	chr1:150811005-150813057	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150782200-150813000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:150783200-150816600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:150783200-150816800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:150785800-150812400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:150792200-150814800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:150792600-150815400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:150792800-150812400	Strong transcription	Primary B cells from peripheral blood	blood
8	chr1:150793000-150816400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:150793200-150823200	Strong transcription	Placenta	Placenta
10	chr1:150793600-150815800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:150793800-150813800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:150794000-150813600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:150794600-150812800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:150797000-150814400	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:150797400-150812400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:150797400-150813000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:150797400-150813400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:150797600-150812400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:150797600-150812400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr1:150797600-150812400	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:150797600-150812600	Strong transcription	Adipose Nuclei	Adipose
22	chr1:150797600-150813400	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr1:150797600-150815600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:150797800-150812600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:150797800-150812600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:150797800-150812600	Strong transcription	Fetal Brain Female	brain
27	chr1:150798200-150815600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:150798400-150812400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:150799600-150816600	Strong transcription	HSMM	muscle
30	chr1:150799800-150817800	Strong transcription	Primary B cells from cord blood	blood
31	chr1:150801800-150814800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:150801800-150818600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:150801800-150824600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr1:150802800-150815200	Strong transcription	Fetal Lung	lung
35	chr1:150803200-150813200	Strong transcription	Colon Smooth Muscle	Colon
36	chr1:150804000-150812600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr1:150805800-150824600	Weak transcription	HMEC	breast
38	chr1:150806600-150812400	Strong transcription	Osteobl	bone
39	chr1:150807200-150814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr1:150807200-150820800	Weak transcription	Spleen	Spleen
41	chr1:150807400-150824600	Weak transcription	A549	lung
42	chr1:150807400-150847000	Weak transcription	Colonic Mucosa	Colon
43	chr1:150808000-150821600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:150808800-150847000	Weak transcription	Psoas Muscle	Psoas
45	chr1:150809000-150813000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:150809000-150816400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:150809000-150819200	Weak transcription	K562	blood
48	chr1:150809000-150823000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr1:150809000-150824400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:150809000-150824600	Weak transcription	H9 Cell Line	embryonic stem cell

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