Variant report

Variant	rs587655461
Chromosome Location	chr1:150601595-150601596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr1:150601334-150602417	U2OS	brain:	n/a	n/a
2	MYBL2	chr1:150601285-150602599	HepG2	liver:	n/a	n/a
3	SP1	chr1:150601431-150601877	K562	blood:	n/a	chr1:150601439-150601452 chr1:150601437-150601446
4	ZNF143	chr1:150601571-150602381	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr1:150601083-150602558	GM12891	blood:	n/a	n/a
6	CHD1	chr1:150601316-150602085	H1-hESC	embryonic stem cell:	n/a	chr1:150601858-150601868
7	CUX1	chr1:150601467-150602476	GM12878	blood:	n/a	n/a
8	ZNF143	chr1:150601523-150602384	Hela-S3	cervix:	n/a	n/a
9	CREB1	chr1:150601306-150602588	HepG2	liver:	n/a	n/a
10	REST	chr1:150601271-150602531	HL-60	blood:	n/a	chr1:150601644-150601651
11	IRF3	chr1:150601244-150602407	Hela-S3	cervix:	n/a	chr1:150601675-150601684 chr1:150602270-150602284
12	CHD2	chr1:150601284-150602498	K562	blood:	n/a	chr1:150601858-150601868
13	PML	chr1:150601296-150602559	K562	blood:	n/a	n/a
14	MYC	chr1:150601217-150601828	MCF10A-Er-Src	breast:	n/a	chr1:150601801-150601810
15	TBL1XR1	chr1:150601452-150602350	K562	blood:	n/a	n/a
16	CREB1	chr1:150601454-150602524	ECC-1	luminal epithelium:	n/a	n/a
17	SP1	chr1:150601224-150603547	HCT-116	colon:	n/a	chr1:150601439-150601452 chr1:150602271-150602281 chr1:150602270-150602282 chr1:150602272-150602281 chr1:150602003-150602012 chr1:150602271-150602280 chr1:150602270-150602282 chr1:150601437-150601446 chr1:150602271-150602281 chr1:150602272-150602281 chr1:150601999-150602013
18	POLR2A	chr1:150601480-150602505	HepG2	liver:	n/a	n/a
19	POLR2A	chr1:150601502-150602174	HepG2	liver:	n/a	n/a
20	FOS	chr1:150601451-150602440	K562	blood:	n/a	chr1:150602144-150602153 chr1:150601677-150601686
21	POLR2A	chr1:150601459-150602496	HepG2	liver:	n/a	n/a
22	MAX	chr1:150601421-150602436	NB4	blood:	n/a	chr1:150601801-150601810
23	MXI1	chr1:150601533-150602492	H1-hESC	embryonic stem cell:	n/a	n/a
24	CHD1	chr1:150601057-150602437	GM12878	blood:	n/a	chr1:150601858-150601868
25	MAX	chr1:150601337-150601978	ECC-1	luminal epithelium:	n/a	chr1:150601801-150601810
26	HEY1	chr1:150601272-150602503	HepG2	liver:	n/a	n/a
27	POLR2A	chr1:150601530-150601666	A549	lung:	n/a	n/a
28	STAT3	chr1:150601470-150601625	MCF10A-Er-Src	breast:	n/a	n/a
29	EBF1	chr1:150601558-150601833	GM12878	blood:	n/a	n/a
30	POLR2A	chr1:150601163-150603592	HepG2	liver:	n/a	n/a
31	CEBPB	chr1:150601504-150602310	HepG2	liver:	n/a	n/a
32	RFX5	chr1:150601333-150602295	H1-hESC	embryonic stem cell:	n/a	chr1:150601676-150601685
33	JUND	chr1:150601122-150602658	SK-N-SH	brain:	n/a	chr1:150602144-150602153 chr1:150601677-150601686
34	YY1	chr1:150601421-150602528	HCT-116	colon:	n/a	chr1:150602060-150602080 chr1:150602271-150602280 chr1:150601435-150601446
35	TAF1	chr1:150601425-150602485	GM12891	blood:	n/a	n/a
36	CHD2	chr1:150601369-150602481	H1-hESC	embryonic stem cell:	n/a	chr1:150601858-150601868
37	MAX	chr1:150601430-150602498	Hela-S3	cervix:	n/a	chr1:150601801-150601810
38	POU2F2	chr1:150601394-150601834	GM12878	blood:	n/a	n/a
39	POLR2A	chr1:150601477-150602446	GM10847	blood:	n/a	n/a
40	TAF1	chr1:150601364-150602541	H1-hESC	embryonic stem cell:	n/a	n/a
41	HEY1	chr1:150601454-150602182	HepG2	liver:	n/a	n/a
42	MYC	chr1:150601515-150602389	MCF10A-Er-Src	breast:	n/a	chr1:150601801-150601810
43	TAF1	chr1:150601549-150602576	A549	lung:	n/a	n/a
44	POU2F2	chr1:150601333-150602502	GM12891	blood:	n/a	n/a
45	MXI1	chr1:150601365-150602499	GM12878	blood:	n/a	n/a
46	CEBPB	chr1:150601366-150602329	A549	lung:	n/a	n/a
47	SP1	chr1:150601352-150602538	H1-hESC	embryonic stem cell:	n/a	chr1:150601439-150601452 chr1:150602271-150602281 chr1:150602270-150602282 chr1:150602272-150602281 chr1:150602003-150602012 chr1:150602271-150602280 chr1:150602270-150602282 chr1:150601437-150601446 chr1:150602271-150602281 chr1:150602272-150602281 chr1:150601999-150602013
48	SIN3A	chr1:150601248-150602514	H1-hESC	embryonic stem cell:	n/a	n/a
49	PBX3	chr1:150601407-150601991	A549	lung:	n/a	chr1:150601661-150601681 chr1:150601676-150601685
50	MAX	chr1:150601449-150602485	A549	lung:	n/a	chr1:150601801-150601810

No.	Distal block	Cell Line	Cell type
1	chr1:150459471..150461027-chr1:150601141..150603564,2	K562	blood:
2	chr1:150549047..150553046-chr1:150599453..150603954,9	MCF-7	breast:
3	chr1:150600957..150603301-chr1:150669104..150670860,3	MCF-7	breast:
4	chr1:150600620..150604710-chr1:150667156..150670884,6	K562	blood:
5	chr1:150600086..150604497-chr1:150798595..150803015,4	MCF-7	breast:
6	chr1:150600704..150602423-chr1:150722921..150725680,2	MCF-7	breast:
7	chr1:150538995..150557554-chr1:150581886..150604495,126	K562	blood:
8	chr1:150600649..150603708-chr1:150666872..150671304,5	K562	blood:
9	chr1:150458113..150460742-chr1:150599904..150603804,4	MCF-7	breast:
10	chr1:150601356..150602327-chr16:71929417..71930053,2	Hela-S3	cervix:
11	chr1:150532182..150537720-chr1:150588719..150604935,28	MCF-7	breast:
12	chr1:150533703..150535548-chr1:150601310..150603343,2	K562	blood:
13	chr1:45987145..45987741-chr1:150601221..150601934,2	Hela-S3	cervix:
14	chr1:150548752..150555486-chr1:150599368..150605834,15	MCF-7	breast:
15	chr1:150523106..150526873-chr1:150601148..150603781,4	K562	blood:
16	chr1:150547986..150553838-chr1:150598744..150606232,19	K562	blood:
17	chr1:150520854..150524966-chr1:150599341..150603058,4	K562	blood:
18	chr1:150601091..150602624-chr1:150945367..150947119,2	MCF-7	breast:
19	chr1:150531290..150540028-chr1:150591374..150603951,29	MCF-7	breast:
20	chr1:150600280..150603071-chr17:56707754..56709707,2	MCF-7	breast:
21	chr1:150600402..150602469-chr12:6642434..6645132,2	MCF-7	breast:

Variant related genes	Relation type
ENSA	TF binding region
ENSG00000143374	Chromatin interaction
ENSG00000264553	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000264508	Chromatin interaction
ENSG00000163131	Chromatin interaction
ENSG00000143437	Chromatin interaction
ENSG00000143418	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000143382	Chromatin interaction
ENSG00000143457	Chromatin interaction
ENSG00000264584	Chromatin interaction
ENSG00000111640	Chromatin interaction
ENSG00000225996	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000255966	Chromatin interaction
ENSG00000231073	Chromatin interaction
ENSG00000203804	Chromatin interaction
ENSG00000182149	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	esv16022	chr1:150601192-150602306	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150600200-150603000	Active TSS	Right Ventricle	heart
2	chr1:150600400-150601600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:150600400-150601600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:150600400-150603200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:150600400-150603400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:150600400-150603600	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr1:150600400-150603800	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:150600600-150601600	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr1:150600600-150602800	Active TSS	Esophagus	oesophagus
10	chr1:150600600-150603000	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr1:150600600-150603200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr1:150600600-150604200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr1:150600800-150601600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:150600800-150601600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:150600800-150601600	Active TSS	Right Atrium	heart
16	chr1:150600800-150602800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:150600800-150602800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:150600800-150602800	Active TSS	Placenta	Placenta
19	chr1:150600800-150603000	Active TSS	Aorta	Aorta
20	chr1:150600800-150603000	Active TSS	Brain Angular Gyrus	brain
21	chr1:150600800-150603200	Active TSS	Colonic Mucosa	Colon
22	chr1:150600800-150603400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:150600800-150603800	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr1:150601000-150601600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:150601000-150601600	Bivalent/Poised TSS	HepG2	liver
26	chr1:150601000-150602400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:150601000-150602600	Active TSS	Fetal Muscle Trunk	muscle
28	chr1:150601000-150602600	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr1:150601000-150602800	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr1:150601000-150602800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:150601000-150602800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:150601000-150602800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:150601000-150602800	Active TSS	Brain Substantia Nigra	brain
34	chr1:150601000-150602800	Active TSS	Colon Smooth Muscle	Colon
35	chr1:150601000-150602800	Active TSS	Fetal Intestine Large	intestine
36	chr1:150601000-150602800	Active TSS	Pancreas	Pancrea
37	chr1:150601000-150602800	Active TSS	Placenta Amnion	Placenta Amnion
38	chr1:150601000-150602800	Active TSS	GM12878-XiMat	blood
39	chr1:150601000-150602800	Active TSS	NHDF-Ad	bronchial
40	chr1:150601000-150603000	Active TSS	H1 Cell Line	embryonic stem cell
41	chr1:150601000-150603000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:150601000-150603000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:150601000-150603000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:150601000-150603000	Active TSS	Left Ventricle	heart
45	chr1:150601000-150603000	Active TSS	Psoas Muscle	Psoas
46	chr1:150601000-150603000	Active TSS	A549	lung
47	chr1:150601000-150603000	Active TSS	K562	blood
48	chr1:150601000-150603200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:150601000-150603200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:150601000-150603200	Active TSS	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links