Variant report

Variant	rs587671165
Chromosome Location	chr15:83316545-83316546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr15:83315964-83316927	PANC-1	pancreas:	n/a	n/a
2	ZNF384	chr15:83316162-83316663	K562	blood:	n/a	n/a
3	RCOR1	chr15:83315903-83316579	K562	blood:	n/a	n/a
4	MAZ	chr15:83314805-83317083	K562	blood:	n/a	chr15:83316013-83316022 chr15:83316011-83316019 chr15:83316463-83316472 chr15:83316011-83316024 chr15:83316013-83316022 chr15:83316449-83316458 chr15:83315414-83315425 chr15:83316462-83316473 chr15:83316011-83316024 chr15:83316011-83316024 chr15:83316012-83316023
5	POLR2A	chr15:83316393-83316742	U87	brain:	n/a	n/a
6	TCF7L2	chr15:83316142-83316592	PANC-1	pancreas:	n/a	n/a
7	MAX	chr15:83316043-83316696	MCF-7	breast:	n/a	chr15:83316463-83316472 chr15:83316449-83316458 chr15:83316462-83316473
8	E2F6	chr15:83315572-83317593	H1-hESC	embryonic stem cell:	n/a	chr15:83316357-83316367 chr15:83315968-83315977 chr15:83315984-83315999 chr15:83315862-83315874 chr15:83315682-83315689 chr15:83316377-83316384
9	MAX	chr15:83315573-83316982	A549	lung:	n/a	chr15:83316013-83316022 chr15:83316011-83316019 chr15:83316463-83316472 chr15:83316011-83316024 chr15:83316013-83316022 chr15:83316449-83316458 chr15:83316462-83316473 chr15:83316011-83316024 chr15:83316011-83316024 chr15:83316012-83316023
10	SP1	chr15:83315977-83316635	K562	blood:	n/a	chr15:83316476-83316485 chr15:83316500-83316509 chr15:83316415-83316429 chr15:83316415-83316424 chr15:83316499-83316508 chr15:83316498-83316510
11	MAX	chr15:83315290-83316854	K562	blood:	n/a	chr15:83316013-83316022 chr15:83316011-83316019 chr15:83316463-83316472 chr15:83316011-83316024 chr15:83316013-83316022 chr15:83316449-83316458 chr15:83315414-83315425 chr15:83316462-83316473 chr15:83316011-83316024 chr15:83316011-83316024 chr15:83316012-83316023
12	USF1	chr15:83315850-83316685	H1-hESC	embryonic stem cell:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
13	POLR2A	chr15:83316198-83316834	A549	lung:	n/a	n/a
14	MAX	chr15:83315375-83317625	H1-hESC	embryonic stem cell:	n/a	chr15:83316013-83316022 chr15:83316011-83316019 chr15:83316463-83316472 chr15:83316011-83316024 chr15:83316013-83316022 chr15:83316449-83316458 chr15:83315414-83315425 chr15:83316462-83316473 chr15:83316011-83316024 chr15:83316011-83316024 chr15:83316012-83316023
15	CTCF	chr15:83315947-83316667	A549	lung:	n/a	n/a
16	POLR2A	chr15:83316026-83316828	K562	blood:	n/a	n/a
17	MAX	chr15:83315736-83316717	ECC-1	luminal epithelium:	n/a	chr15:83316013-83316022 chr15:83316011-83316019 chr15:83316463-83316472 chr15:83316011-83316024 chr15:83316013-83316022 chr15:83316449-83316458 chr15:83316462-83316473 chr15:83316011-83316024 chr15:83316011-83316024 chr15:83316012-83316023
18	POLR2A	chr15:83316074-83316818	K562	blood:	n/a	n/a
19	USF1	chr15:83315801-83316657	SK-N-SH_RA	brain:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
20	POLR2A	chr15:83316087-83316862	U87	brain:	n/a	n/a
21	POLR2A	chr15:83314860-83316964	K562	blood:	n/a	n/a
22	CCNT2	chr15:83315005-83317012	K562	blood:	n/a	chr15:83315968-83315977
23	USF1	chr15:83316278-83316609	GM12878	blood:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
24	POLR2A	chr15:83314902-83316627	K562	blood:	n/a	n/a
25	E2F6	chr15:83315648-83316822	A549	lung:	n/a	chr15:83316357-83316367 chr15:83315968-83315977 chr15:83315984-83315999 chr15:83315862-83315874 chr15:83315682-83315689 chr15:83316377-83316384
26	USF1	chr15:83315815-83316560	A549	lung:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
27	MYC	chr15:83316055-83317166	A549	lung:	n/a	chr15:83316463-83316472 chr15:83316449-83316458 chr15:83316462-83316473
28	E2F6	chr15:83315690-83316821	K562	blood:	n/a	chr15:83316357-83316367 chr15:83315968-83315977 chr15:83315984-83315999 chr15:83315862-83315874 chr15:83316377-83316384
29	USF1	chr15:83315831-83316697	SK-N-SH	brain:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
30	JUND	chr15:83316119-83316689	A549	lung:	n/a	chr15:83316417-83316426 chr15:83316398-83316406
31	TBL1XR1	chr15:83315913-83316582	K562	blood:	n/a	n/a
32	CHD2	chr15:83315866-83316736	K562	blood:	n/a	chr15:83316377-83316384
33	TCF12	chr15:83316203-83316862	ECC-1	luminal epithelium:	n/a	n/a
34	USF1	chr15:83315835-83316639	K562	blood:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
35	MYC	chr15:83315366-83316990	K562	blood:	n/a	chr15:83316013-83316022 chr15:83316011-83316019 chr15:83316463-83316472 chr15:83316011-83316024 chr15:83316013-83316022 chr15:83316449-83316458 chr15:83315414-83315425 chr15:83316462-83316473 chr15:83316011-83316024 chr15:83316011-83316024 chr15:83316012-83316023
36	USF1	chr15:83316297-83316561	HepG2	liver:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
37	EP300	chr15:83316134-83316647	SK-N-SH	brain:	n/a	chr15:83316362-83316378
38	MXI1	chr15:83315835-83317088	SK-N-SH	brain:	n/a	chr15:83316014-83316023
39	USF1	chr15:83315877-83316617	SK-N-SH_RA	brain:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
40	POLR2A	chr15:83316067-83316846	PANC-1	pancreas:	n/a	n/a
41	ELF1	chr15:83315485-83317091	K562	blood:	n/a	chr15:83316355-83316367
42	TAF1	chr15:83315841-83316629	K562	blood:	n/a	n/a
43	MYC	chr15:83314815-83316876	K562	blood:	n/a	chr15:83316013-83316022 chr15:83316011-83316019 chr15:83316463-83316472 chr15:83316011-83316024 chr15:83316013-83316022 chr15:83316449-83316458 chr15:83315414-83315425 chr15:83316462-83316473 chr15:83316011-83316024 chr15:83316011-83316024 chr15:83316012-83316023
44	BHLHE40	chr15:83314933-83316809	K562	blood:	n/a	chr15:83316462-83316471 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
45	USF1	chr15:83315914-83316675	A549	lung:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
46	USF1	chr15:83316311-83316674	H1-hESC	embryonic stem cell:	n/a	chr15:83316462-83316471 chr15:83316462-83316473 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472
47	MXI1	chr15:83316263-83316657	K562	blood:	n/a	n/a
48	HCFC1	chr15:83315938-83316754	K562	blood:	n/a	n/a
49	EGR1	chr15:83316098-83316545	H1-hESC	embryonic stem cell:	n/a	chr15:83316357-83316370 chr15:83316358-83316367 chr15:83316352-83316374 chr15:83316357-83316367 chr15:83316357-83316370 chr15:83316357-83316370 chr15:83316358-83316368 chr15:83316358-83316368 chr15:83316354-83316368 chr15:83316357-83316370 chr15:83316358-83316369 chr15:83316500-83316513 chr15:83316356-83316370
50	BHLHE40	chr15:83316127-83316639	A549	lung:	n/a	chr15:83316462-83316471 chr15:83316461-83316474 chr15:83316463-83316472 chr15:83316464-83316473 chr15:83316463-83316472

No.	Distal block	Cell Line	Cell type
1	chr15:83316185..83318129-chr15:83417608..83419750,3	K562	blood:
2	chr15:83315484..83318072-chr15:83348095..83350570,4	MCF-7	breast:
3	chr15:83313668..83318129-chr15:83416864..83421207,8	K562	blood:
4	chr15:83313427..83317808-chr15:83477553..83483000,6	K562	blood:
5	chr15:83316099..83317759-chr15:83406962..83409710,2	K562	blood:
6	chr15:83315715..83320562-chr15:83347753..83351536,6	K562	blood:
7	chr15:83313759..83319278-chr15:83347483..83351536,8	K562	blood:
8	chr15:83314418..83317134-chr15:83417560..83419673,2	MCF-7	breast:
9	chr15:83315603..83319675-chr15:83327659..83331605,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-379H8.1.1-1	chr15:83316521-83317559	ENSG00000244937
2	lnc-RP11-379H8.1.1-1	chr15:83316521-83317559	ENSG00000259462.1

Variant related genes	Relation type
CPEB1	TF binding region
ENSG00000259315	Chromatin interaction
ENSG00000103723	Chromatin interaction
ENSG00000250988	Chromatin interaction
ENSG00000156232	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054171	chr15:83237514-83468077	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1036950	chr15:83245326-83461261	Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1036462	chr15:83245326-83472507	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv34318	chr15:83283555-83453495	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1039021	chr15:83283994-83431548	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3344877	chr15:83294946-83316565	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3493740	chr15:83295897-83458896	Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	esv3493739	chr15:83296247-83458846	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	esv3493738	chr15:83296905-83457854	Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	esv3493742	chr15:83296993-83457792	Weak transcription Active TSS Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv817702	chr15:83299461-83457424	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	esv1808975	chr15:83307574-83360168	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	esv3434026	chr15:83314547-83318195	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	esv33057	chr15:83314833-83317588	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	esv3360562	chr15:83315522-83318070	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83314800-83317200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:83314800-83317600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr15:83314800-83317600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:83314800-83317800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:83315000-83317200	Active TSS	Brain Substantia Nigra	brain
6	chr15:83315000-83317200	Active TSS	Right Atrium	heart
7	chr15:83315000-83317200	Bivalent/Poised TSS	NHLF	lung
8	chr15:83315000-83317400	Active TSS	Brain Angular Gyrus	brain
9	chr15:83315000-83317400	Bivalent Enhancer	Fetal Brain Male	brain
10	chr15:83315000-83317400	Bivalent Enhancer	Placenta	Placenta
11	chr15:83315000-83318200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr15:83315200-83317000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr15:83315200-83317600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:83315400-83316600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:83315400-83316800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
16	chr15:83315400-83317200	Bivalent Enhancer	Liver	Liver
17	chr15:83315400-83317200	Bivalent/Poised TSS	NHEK	skin
18	chr15:83315400-83317400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr15:83315600-83316600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
20	chr15:83315600-83316600	Bivalent Enhancer	Stomach Mucosa	stomach
21	chr15:83315600-83317000	Enhancers	Fetal Heart	heart
22	chr15:83315600-83317200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
23	chr15:83315600-83317400	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr15:83315600-83317600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:83315800-83316600	Bivalent/Poised TSS	NH-A	brain
26	chr15:83315800-83316800	Active TSS	Brain Cingulate Gyrus	brain
27	chr15:83315800-83316800	Flanking Bivalent TSS/Enh	HMEC	breast
28	chr15:83315800-83317200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:83315800-83317200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:83315800-83317200	Bivalent Enhancer	Fetal Thymus	thymus
31	chr15:83315800-83317200	Active TSS	NHDF-Ad	bronchial
32	chr15:83315800-83317400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:83315800-83317400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
34	chr15:83315800-83317400	Flanking Active TSS	Right Ventricle	heart
35	chr15:83315800-83317400	Bivalent/Poised TSS	HSMMtube	muscle
36	chr15:83315800-83317600	Enhancers	Lung	lung
37	chr15:83316000-83316800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:83316000-83316800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
39	chr15:83316000-83316800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr15:83316000-83316800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
41	chr15:83316000-83317000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
42	chr15:83316000-83317000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr15:83316000-83317000	Active TSS	Brain Hippocampus Middle	brain
44	chr15:83316000-83317000	Flanking Bivalent TSS/Enh	Thymus	Thymus
45	chr15:83316000-83317200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
46	chr15:83316000-83317200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:83316000-83317200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:83316000-83317200	Active TSS	Aorta	Aorta
49	chr15:83316000-83317200	Active TSS	Brain Anterior Caudate	brain
50	chr15:83316000-83317200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links