Variant report

Variant	rs587674721
Chromosome Location	chr1:120452728-120452729
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOTCH2-1	chr1:120451878-120453236	ENSG00000261662.1

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1000939	chr1:119983342-120471049	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv428201	chr1:120267313-120697156	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2757750	chr1:120267313-121226013	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	esv2758965	chr1:120267313-121226013	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv915933	chr1:120323527-120471049	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv831226	chr1:120331599-120471049	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv533996	chr1:120359524-120471049	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv436325	chr1:120390914-120471049	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv547625	chr1:120422705-120466108	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv2610	chr1:120451060-120471049	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:120444600-120453000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:120446400-120454400	Weak transcription	NH-A	brain
3	chr1:120446600-120453400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:120448200-120471000	Weak transcription	Right Atrium	heart
5	chr1:120448400-120453200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:120448400-120457400	Weak transcription	Fetal Brain Female	brain
7	chr1:120448800-120454800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:120448800-120455800	Weak transcription	NHLF	lung
9	chr1:120448800-120456000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:120449000-120456600	Weak transcription	Aorta	Aorta
11	chr1:120449200-120452800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:120449200-120457200	Weak transcription	Gastric	stomach
13	chr1:120449400-120453000	Weak transcription	Esophagus	oesophagus
14	chr1:120449400-120453400	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:120449600-120456200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:120449600-120457800	Weak transcription	Fetal Intestine Small	intestine
17	chr1:120449800-120453400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr1:120450000-120453400	Weak transcription	Osteobl	bone
19	chr1:120450000-120473000	Strong transcription	HSMM	muscle
20	chr1:120450200-120453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:120450200-120456200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:120450200-120457800	Weak transcription	Colonic Mucosa	Colon
23	chr1:120450200-120458600	Weak transcription	HepG2	liver
24	chr1:120450400-120453000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:120450400-120455200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:120450400-120455600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:120450400-120456800	Weak transcription	Fetal Intestine Large	intestine
28	chr1:120450400-120456800	Weak transcription	Pancreas	Pancrea
29	chr1:120450600-120453000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:120450600-120453000	Weak transcription	Fetal Stomach	stomach
31	chr1:120450600-120454400	Weak transcription	NHDF-Ad	bronchial
32	chr1:120450600-120455800	Weak transcription	Liver	Liver
33	chr1:120450800-120453400	Weak transcription	HSMMtube	muscle
34	chr1:120450800-120454400	Weak transcription	Primary B cells from cord blood	blood
35	chr1:120450800-120456600	Weak transcription	Thymus	Thymus
36	chr1:120451000-120454800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr1:120451000-120455200	Weak transcription	Placenta	Placenta
38	chr1:120451000-120456600	Weak transcription	Spleen	Spleen
39	chr1:120451000-120458400	Weak transcription	Small Intestine	intestine
40	chr1:120451000-120466800	Weak transcription	Fetal Brain Male	brain
41	chr1:120451400-120453000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr1:120451400-120456600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr1:120451400-120457200	Weak transcription	Hela-S3	cervix
44	chr1:120451600-120455600	Weak transcription	Fetal Lung	lung
45	chr1:120451600-120480000	Weak transcription	Psoas Muscle	Psoas
46	chr1:120451800-120455400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr1:120452000-120455600	Weak transcription	Adipose Nuclei	Adipose
48	chr1:120452000-120456600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:120452000-120485600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:120452200-120453200	Weak transcription	HMEC	breast

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