Variant report

Variant	rs587676941
Chromosome Location	chr14:105715237-105715238
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:105714611-105715313	A549	lung:	n/a	n/a
2	POLR2A	chr14:105714527-105715428	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr14:105714554-105715237	GM12878	blood:	n/a	n/a
4	MAZ	chr14:105714427-105716110	IMR90	lung:	n/a	n/a
5	EBF1	chr14:105714915-105715587	GM12878	blood:	n/a	n/a
6	POLR2A	chr14:105714443-105715597	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr14:105714378-105715641	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr14:105714548-105715600	GM15510	blood:	n/a	n/a
9	HA-E2F1	chr14:105714434-105715267	MCF-7	breast:	n/a	chr14:105715225-105715236 chr14:105714822-105714831 chr14:105715036-105715046
10	MYC	chr14:105714628-105715333	MCF-7	breast:	n/a	n/a
11	YY1	chr14:105715002-105715339	SK-N-SH_RA	brain:	n/a	chr14:105715035-105715044 chr14:105715035-105715046 chr14:105715203-105715215 chr14:105715038-105715047
12	YY1	chr14:105714987-105715560	GM12878	blood:	n/a	chr14:105715035-105715044 chr14:105715035-105715046 chr14:105715203-105715215 chr14:105715038-105715047
13	MXI1	chr14:105713878-105716413	IMR90	lung:	n/a	n/a
14	POLR2A	chr14:105714618-105715256	MCF10A-Er-Src	breast:	n/a	n/a
15	MAX	chr14:105715092-105715271	GM12878	blood:	n/a	n/a
16	HA-E2F1	chr14:105714597-105715611	Hela-S3	cervix:	n/a	chr14:105715225-105715236 chr14:105714822-105714831 chr14:105715036-105715046
17	POLR2A	chr14:105714363-105715759	GM12878	blood:	n/a	n/a
18	YY1	chr14:105714901-105715394	GM12891	blood:	n/a	chr14:105715035-105715044 chr14:105715035-105715046 chr14:105715203-105715215 chr14:105715038-105715047
19	BACH1	chr14:105714406-105715709	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr14:105713980-105715268	HL-60	blood:	n/a	n/a
21	MAX	chr14:105714143-105715844	A549	lung:	n/a	n/a
22	POLR2A	chr14:105714504-105715497	GM18505	blood:	n/a	n/a
23	EGR1	chr14:105715182-105715642	ECC-1	luminal epithelium:	n/a	chr14:105715348-105715362 chr14:105715327-105715341
24	POLR2A	chr14:105714533-105715726	HUVEC	blood vessel:	n/a	n/a
25	YY1	chr14:105714883-105715597	GM12878	blood:	n/a	chr14:105715035-105715044 chr14:105715035-105715046 chr14:105715203-105715215 chr14:105715038-105715047
26	EGR1	chr14:105715164-105715588	ECC-1	luminal epithelium:	n/a	chr14:105715348-105715362 chr14:105715327-105715341
27	YY1	chr14:105715056-105715385	H1-hESC	embryonic stem cell:	n/a	chr14:105715203-105715215
28	POLR2A	chr14:105714539-105715353	A549	lung:	n/a	n/a
29	GABPA	chr14:105715044-105715292	H1-hESC	embryonic stem cell:	n/a	n/a
30	RFX5	chr14:105713778-105715337	IMR90	lung:	n/a	chr14:105714779-105714788
31	POLR2A	chr14:105714430-105715329	MCF-7	breast:	n/a	n/a
32	POLR2A	chr14:105714542-105715238	GM18951	blood:	n/a	n/a
33	POLR2A	chr14:105714552-105715485	GM19099	blood:	n/a	n/a
34	MAX	chr14:105714208-105715521	ECC-1	luminal epithelium:	n/a	n/a
35	POLR2A	chr14:105714543-105715242	A549	lung:	n/a	n/a
36	POLR2A	chr14:105714516-105715415	Gliobla	brain:	n/a	n/a
37	YY1	chr14:105714921-105715425	ECC-1	luminal epithelium:	n/a	chr14:105715035-105715044 chr14:105715035-105715046 chr14:105715203-105715215 chr14:105715038-105715047
38	YY1	chr14:105714922-105715400	SK-N-SH_RA	brain:	n/a	chr14:105715035-105715044 chr14:105715035-105715046 chr14:105715203-105715215 chr14:105715038-105715047
39	EGR1	chr14:105715158-105715553	GM12878	blood:	n/a	chr14:105715348-105715362 chr14:105715327-105715341
40	POLR2A	chr14:105714592-105715337	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr14:105714508-105715512	GM12892	blood:	n/a	n/a
42	POLR2A	chr14:105714528-105715780	HUVEC	blood vessel:	n/a	n/a
43	POLR2A	chr14:105714536-105716024	IMR90	lung:	n/a	n/a
44	POLR2A	chr14:105714511-105715691	A549	lung:	n/a	n/a
45	POLR2A	chr14:105714554-105715280	GM12878	blood:	n/a	n/a
46	POLR2A	chr14:105714452-105715274	H1-neurons	neurons:	n/a	n/a
47	EGR1	chr14:105715232-105715455	GM12878	blood:	n/a	chr14:105715348-105715362 chr14:105715327-105715341
48	POLR2A	chr14:105714452-105715317	MCF-7	breast:	n/a	n/a
49	CREB1	chr14:105714431-105715408	A549	lung:	n/a	n/a
50	POLR2A	chr14:105714928-105715291	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:105633069..105635536-chr14:105714407..105716304,2	MCF-7	breast:
2	chr11:62358871..62359665-chr14:105714579..105715245,2	Hela-S3	cervix:
3	chr14:105713379..105716522-chr14:105764463..105769159,4	MCF-7	breast:
4	chr14:105687326..105689962-chr14:105713390..105716265,3	MCF-7	breast:

Variant related genes	Relation type
BTBD6	TF binding region
BRF1	TF binding region
ENSG00000255508	Chromatin interaction
ENSG00000149016	Chromatin interaction
ENSG00000184916	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000179364	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
8	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
9	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv902433	chr14:105596054-105719306	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
12	nsv902441	chr14:105602619-105803170	Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv902442	chr14:105602619-105803170	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv1817919	chr14:105605199-105803170	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
16	nsv902460	chr14:105646179-105731255	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv902464	chr14:105654606-105717265	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	nsv510651	chr14:105656882-105725155	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv566186	chr14:105675701-105779305	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
20	nsv902466	chr14:105704465-105803170	Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
21	esv29986	chr14:105707292-105803170	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
22	nsv902467	chr14:105709106-105719306	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv902468	chr14:105712091-105721808	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	esv3357131	chr14:105713857-105716805	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105690400-105721400	Weak transcription	K562	blood
2	chr14:105711800-105717000	Enhancers	Fetal Brain Male	brain
3	chr14:105713800-105716000	Weak transcription	HepG2	liver
4	chr14:105714000-105715800	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr14:105714000-105716000	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr14:105714000-105716200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:105714200-105715800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr14:105714200-105715800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr14:105714200-105716000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr14:105714200-105716200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr14:105714400-105715400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:105714400-105715800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:105714400-105715800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:105714400-105715800	Active TSS	Aorta	Aorta
15	chr14:105714400-105715800	Active TSS	Fetal Kidney	kidney
16	chr14:105714400-105716000	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr14:105714400-105716000	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr14:105714600-105715400	Active TSS	H1 Cell Line	embryonic stem cell
19	chr14:105714600-105715400	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr14:105714600-105715400	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr14:105714600-105715400	Active TSS	Spleen	Spleen
22	chr14:105714600-105715600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:105714600-105715600	Active TSS	Primary monocytes fromperipheralblood	blood
24	chr14:105714600-105715600	Active TSS	Primary T cells fromperipheralblood	blood
25	chr14:105714600-105715600	Active TSS	Primary hematopoietic stem cells	blood
26	chr14:105714600-105715600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr14:105714600-105715600	Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr14:105714600-105715600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:105714600-105715600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr14:105714600-105715600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:105714600-105715600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:105714600-105715600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:105714600-105715600	Active TSS	Brain Anterior Caudate	brain
34	chr14:105714600-105715600	Active TSS	Duodenum Mucosa	Duodenum
35	chr14:105714600-105715600	Active TSS	Esophagus	oesophagus
36	chr14:105714600-105715600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr14:105714600-105715600	Active TSS	Fetal Muscle Leg	muscle
38	chr14:105714600-105715600	Active TSS	Fetal Thymus	thymus
39	chr14:105714600-105715600	Active TSS	Left Ventricle	heart
40	chr14:105714600-105715600	Active TSS	Lung	lung
41	chr14:105714600-105715600	Active TSS	Psoas Muscle	Psoas
42	chr14:105714600-105715600	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr14:105714600-105715600	Active TSS	Small Intestine	intestine
44	chr14:105714600-105715600	Active TSS	NHLF	lung
45	chr14:105714600-105715800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:105714600-105715800	Active TSS	Muscle Satellite Cultured Cells	--
47	chr14:105714600-105715800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:105714600-105715800	Active TSS	Brain Angular Gyrus	brain
49	chr14:105714600-105715800	Active TSS	Brain Germinal Matrix	brain
50	chr14:105714600-105715800	Active TSS	Brain Hippocampus Middle	brain

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