Variant report

Variant	rs58768243
Chromosome Location	chr15:77882838-77882839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77877705..77880943-chr15:77882469..77885198,3	K562	blood:
2	chr15:77872896..77874517-chr15:77881445..77883437,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59401622	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77875600-77890000	Weak transcription	Right Ventricle	heart
2	chr15:77875600-77892000	Weak transcription	Right Atrium	heart
3	chr15:77877200-77884000	Weak transcription	Fetal Heart	heart
4	chr15:77877400-77884400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:77880800-77883200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:77881000-77883000	Enhancers	Brain Anterior Caudate	brain
7	chr15:77881000-77883000	Enhancers	Brain Cingulate Gyrus	brain
8	chr15:77881000-77883000	Enhancers	Brain Substantia Nigra	brain
9	chr15:77881000-77890600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:77881200-77883000	Enhancers	Fetal Muscle Leg	muscle
11	chr15:77881400-77883800	Enhancers	Brain Hippocampus Middle	brain
12	chr15:77881400-77885200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:77882000-77883000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:77882000-77883000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:77882600-77883000	Enhancers	Brain Angular Gyrus	brain
16	chr15:77882800-77883000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:77882800-77883000	Enhancers	Rectal Smooth Muscle	rectum
18	chr15:77882800-77883600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:77882800-77884800	Enhancers	HepG2	liver
20	chr15:77882800-77887800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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