Variant report

Variant	rs587684518
Chromosome Location	chr17:34011543-34011544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GAS2L2-1	chr17:34010123-34011922	ENSG00000245181
2	lnc-GAS2L2-1	chr17:34010128-34011922	ENSG00000267003.1

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	esv2647158	chr17:34010985-34012381	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33921000-34024400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:33931000-34040200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:33960000-34024600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:33975000-34025800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr17:33979400-34016600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:33992800-34028200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:33995800-34024600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:33997400-34023200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr17:33997600-34024600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr17:33999400-34043400	Weak transcription	Fetal Brain Male	brain
12	chr17:33999600-34018200	Weak transcription	Fetal Kidney	kidney
13	chr17:34000000-34014200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr17:34001800-34014000	Weak transcription	Right Ventricle	heart
15	chr17:34001800-34014800	Weak transcription	Brain Substantia Nigra	brain
16	chr17:34001800-34018200	Weak transcription	Esophagus	oesophagus
17	chr17:34002000-34017400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:34002000-34032200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr17:34002000-34036800	Weak transcription	Colonic Mucosa	Colon
20	chr17:34002200-34011600	Weak transcription	HepG2	liver
21	chr17:34002200-34014600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr17:34002200-34015000	Weak transcription	HUVEC	blood vessel
23	chr17:34002200-34017000	Weak transcription	Brain Angular Gyrus	brain
24	chr17:34002400-34013200	Weak transcription	Brain Germinal Matrix	brain
25	chr17:34004600-34011800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr17:34004800-34016800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr17:34005400-34024400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr17:34005400-34028400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr17:34005600-34011800	Strong transcription	Adipose Nuclei	Adipose
30	chr17:34005600-34018800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr17:34005600-34024400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr17:34005800-34012000	Strong transcription	Primary T cells from cord blood	blood
33	chr17:34005800-34026600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr17:34006000-34024400	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr17:34006200-34018800	Strong transcription	Fetal Muscle Leg	muscle
36	chr17:34006200-34018800	Strong transcription	Dnd41	blood
37	chr17:34006400-34012000	Strong transcription	Liver	Liver
38	chr17:34006400-34018800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr17:34006400-34019000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr17:34006400-34024200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:34006600-34018800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr17:34006600-34019000	Strong transcription	Fetal Intestine Large	intestine
43	chr17:34006600-34032800	Weak transcription	Stomach Mucosa	stomach
44	chr17:34006600-34039800	Weak transcription	Small Intestine	intestine
45	chr17:34006800-34018600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr17:34007000-34012200	Strong transcription	Fetal Thymus	thymus
47	chr17:34007000-34016400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr17:34007400-34011600	Strong transcription	Brain Hippocampus Middle	brain
49	chr17:34007400-34012000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr17:34007400-34012400	Strong transcription	Rectal Mucosa Donor 29	rectum

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