Variant report

Variant	rs58775672
Chromosome Location	chr13:110941393-110941394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1018041	0.81[ASN][1000 genomes]
rs1018042	0.81[ASN][1000 genomes]
rs12855875	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12865767	1.00[ASN][1000 genomes]
rs12870961	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1411040	0.81[ASN][1000 genomes]
rs2391823	0.81[ASN][1000 genomes]
rs34097827	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34173149	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34633933	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34841474	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34906261	0.81[ASN][1000 genomes]
rs35402290	0.97[ASN][1000 genomes]
rs35513412	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4773139	0.84[EUR][1000 genomes]
rs57541979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57931605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58715265	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58889764	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59245704	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59516573	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60185726	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60232894	1.00[ASN][1000 genomes]
rs66500342	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66553690	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71440056	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72655725	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs953386	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110920200-110951200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:110925400-110949000	Weak transcription	Fetal Kidney	kidney
3	chr13:110928600-110951000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:110931400-110941400	Weak transcription	Fetal Intestine Small	intestine
5	chr13:110934000-110941400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:110934400-110945400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:110936200-110951000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:110936200-110958800	Weak transcription	Gastric	stomach
9	chr13:110936600-110941400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:110937000-110943200	Weak transcription	Colonic Mucosa	Colon
11	chr13:110937000-110955400	Weak transcription	A549	lung
12	chr13:110937400-110941400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:110937400-110951000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:110937400-110952000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:110937800-110946000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:110937800-110947600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:110937800-110950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr13:110938000-110951200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:110938400-110947000	Strong transcription	Osteobl	bone
20	chr13:110939200-110949400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr13:110939600-110941600	Weak transcription	Aorta	Aorta
22	chr13:110939600-110943000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:110939600-110944400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:110939600-110946400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:110939600-110951000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:110939600-110951400	Weak transcription	Fetal Intestine Large	intestine
27	chr13:110939800-110950800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr13:110940000-110941400	Weak transcription	Fetal Lung	lung
29	chr13:110940000-110946800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:110940200-110941400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:110940200-110941400	Weak transcription	Spleen	Spleen
32	chr13:110940200-110941400	Weak transcription	HUVEC	blood vessel
33	chr13:110940200-110941600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:110940200-110941600	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:110940200-110941600	Weak transcription	Lung	lung
36	chr13:110940200-110941800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr13:110940200-110941800	Weak transcription	NH-A	brain
38	chr13:110940200-110942400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr13:110940200-110943200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr13:110940200-110944600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr13:110940200-110946200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:110940200-110946200	Weak transcription	NHLF	lung
43	chr13:110940200-110948400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:110940200-110949200	Weak transcription	Psoas Muscle	Psoas
45	chr13:110940400-110941400	Weak transcription	Adipose Nuclei	Adipose
46	chr13:110940400-110941400	Weak transcription	Fetal Muscle Leg	muscle
47	chr13:110940400-110941400	Weak transcription	Placenta	Placenta
48	chr13:110940400-110941400	Weak transcription	Left Ventricle	heart
49	chr13:110940400-110941600	Weak transcription	Fetal Heart	heart
50	chr13:110940400-110941800	Weak transcription	Stomach Smooth Muscle	stomach

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